View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9812_high_3 (Length: 632)

Name: NF9812_high_3
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9812_high_3
NF9812_high_3
[»] chr4 (19 HSPs)
chr4 (1-614)||(21834168-21834789)
chr4 (360-578)||(53761591-53761816)
chr4 (432-581)||(570478-570624)
chr4 (360-608)||(1548219-1548468)
chr4 (517-608)||(371135-371226)
chr4 (430-609)||(547038-547220)
chr4 (436-554)||(55908575-55908696)
chr4 (506-554)||(1600623-1600671)
chr4 (508-551)||(570737-570780)
chr4 (281-343)||(1548557-1548619)
chr4 (510-548)||(3438419-3438457)
chr4 (422-472)||(3438498-3438548)
chr4 (289-346)||(566101-566158)
chr4 (292-345)||(644746-644799)
chr4 (222-263)||(1600295-1600336)
chr4 (292-345)||(12121588-12121641)
chr4 (310-346)||(546846-546882)
chr4 (432-472)||(6006455-6006495)
chr4 (506-574)||(12121284-12121352)
[»] chr3 (7 HSPs)
chr3 (360-611)||(13470525-13470776)
chr3 (360-611)||(51764233-51764484)
chr3 (436-605)||(51113580-51113749)
chr3 (506-610)||(514519-514623)
chr3 (88-130)||(46926701-46926743)
chr3 (307-346)||(51113911-51113950)
chr3 (154-183)||(51764737-51764766)
[»] chr6 (34 HSPs)
chr6 (360-608)||(6589119-6589367)
chr6 (360-611)||(6394919-6395170)
chr6 (360-611)||(6426566-6426817)
chr6 (360-611)||(6416021-6416272)
chr6 (360-611)||(6432216-6432467)
chr6 (360-611)||(6410061-6410312)
chr6 (360-563)||(6594447-6594650)
chr6 (359-608)||(7119211-7119460)
chr6 (359-608)||(7131689-7131938)
chr6 (364-611)||(14820752-14820996)
chr6 (432-608)||(10579532-10579708)
chr6 (360-611)||(6423272-6423523)
chr6 (360-554)||(7994032-7994226)
chr6 (213-343)||(19632275-19632405)
chr6 (506-611)||(6602998-6603103)
chr6 (506-611)||(19632637-19632742)
chr6 (359-491)||(6402914-6403046)
chr6 (221-343)||(6594739-6594861)
chr6 (433-606)||(8913783-8913955)
chr6 (9-93)||(14800856-14800940)
chr6 (213-348)||(6589451-6589586)
chr6 (213-346)||(6394700-6394833)
chr6 (225-334)||(7994324-7994433)
chr6 (213-346)||(14820529-14820662)
chr6 (506-546)||(9411556-9411596)
chr6 (213-344)||(10579869-10580000)
chr6 (434-611)||(6596721-6596898)
chr6 (359-491)||(6585150-6585282)
chr6 (310-348)||(6603330-6603368)
chr6 (213-298)||(6423053-6423138)
chr6 (302-346)||(6432086-6432130)
chr6 (583-611)||(6585075-6585103)
chr6 (294-346)||(6585367-6585419)
chr6 (218-254)||(6597120-6597156)
[»] chr7 (6 HSPs)
chr7 (360-611)||(10614648-10614899)
chr7 (359-611)||(15091944-15092196)
chr7 (439-611)||(10169923-10170095)
chr7 (439-611)||(10177448-10177620)
chr7 (213-346)||(15092281-15092414)
chr7 (154-183)||(10614398-10614427)
[»] chr1 (3 HSPs)
chr1 (359-609)||(19468294-19468544)
chr1 (510-608)||(9586844-9586942)
chr1 (510-609)||(9581276-9581375)
[»] chr5 (6 HSPs)
chr5 (12-132)||(28524911-28525035)
chr5 (360-608)||(20477878-20478126)
chr5 (507-608)||(28525213-28525314)
chr5 (506-554)||(41889401-41889449)
chr5 (506-554)||(41901385-41901433)
chr5 (364-472)||(41889486-41889594)
[»] chr8 (4 HSPs)
chr8 (508-609)||(17627851-17627952)
chr8 (506-609)||(18315065-18315168)
chr8 (508-610)||(17636188-17636290)
chr8 (506-580)||(32151502-32151576)
[»] chr2 (4 HSPs)
chr2 (436-554)||(1037511-1037632)
chr2 (506-609)||(32785567-32785670)
chr2 (433-491)||(43277373-43277431)
chr2 (310-346)||(45245215-45245251)
[»] scaffold0105 (1 HSPs)
scaffold0105 (506-554)||(645-693)


Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 21834789 - 21834168
Alignment:
Q  1 ggcgttttgagtacaaaaatggtggaggtggtatttgagagtacaacgatggt--------aaaaataaaac-taaaactatgtacacacacatttaaca 91  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||         ||||| ||||| |||||||||| ||||||||||||||||    
T  21834789 ggcgttttgagtacaaaaatggtggaggtgctatttgggagtacaacgatggataaaaaaaaaaaaaaaaacataaaactatgaacacacacatttaaca 21834690  T
Q  92 acacgacattcaaccgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatgcacatttgtaagttgacataaaatctt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834689 acacgacattcaaccgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatgcacatttgtaagttgacataaaatctt 21834590  T
Q  192 aaaacaaaaactacttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatt 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  21834589 aaaacaaaaac-acttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtcacttaaatgcaaatcccccaaattaatt 21834491  T
Q  292 tctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgacataacgtccaacacctgacaagttcaacacctccagcatgggaacta 391  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  21834490 tctctcagttgtgtacatctttctaccatatgtttcattcccttctctgtgacataacgtccaacacctgacaagtccaacacctccagcttgggaacta 21834391  T
Q  392 caaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatat 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834390 caaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatat 21834291  T
Q  492 ctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatag 591  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21834290 ctgtgtggaagaagtcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaaaag 21834191  T
Q  592 agagactttaattgagggtacac 614  Q
    |||||||||||||||||||||||    
T  21834190 agagactttaattgagggtacac 21834168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 360 - 578
Target Start/End: Complemental strand, 53761816 - 53761591
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    ||||||||||||| |||| ||| |||||||||||||||| || | |  |||||||||| |  ||||  | | ||||||||||||| |||| |||||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcag-------ctgcaaattggggaaaattgaagcaaacattatg 552  Q
     ||||||||||||  ||||||||||  |||||  |   | ||||| | |||||||| ||        |||||||||||||||||||| |||||| |||||    
T  53761716 ctccttaaaacttgacaaatacctttagatattcgatcgcaagaacttaaatcaagtagttgcaacttgcaaattggggaaaattgatgcaaacgttatg 53761617  T
Q  553 attctttcatcatttaaccatgaatt 578  Q
    ||  |||||||| ||||||| |||||    
T  53761616 atgttttcatcacttaaccaagaatt 53761591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 432 - 581
Target Start/End: Original strand, 570478 - 570624
Alignment:
Q  432 taagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattgggg 531  Q
    ||||||||||||| |||  |||||||||   ||||||||||  |||||||  || ||||||||  || || || | |||||||| | |||||||||||||    
T  570478 taagttcaaatgcctaagtttacaacat---cttaaaacttgacaaatactatcggatatctgattgcaataacttaaatcaagtatctgcaaattgggg 570574  T
Q  532 aaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcg 581  Q
    ||||| |||||||||||||  ||  |||||||| ||||||||| ||||||    
T  570575 aaaatagaagcaaacattaaaatgttttcatcacttaaccatgtattgcg 570624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 360 - 608
Target Start/End: Complemental strand, 1548468 - 1548219
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttga-tactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaaca 458  Q
    |||||||||||||||||||||  |||||| | ||||||| | | | | |||||||||||||  ||| ||  | ||||||||| ||  |||||||||||||    
T  1548468 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaaca 1548369  T
Q  459 tttccttaaaacttcgcaaataccttc---tgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgatt 555  Q
    |   ||||||||||| |||||||||||   ||||||     || ||  | ||||||||||||| ||||||||||||||||| |||| ||| ||| ||||     
T  1548368 t---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatg 1548272  T
Q  556 ctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgagg 608  Q
     |||||||  |||| | ||||||| |   |||| |||| ||||||||||||||    
T  1548271 gtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 1548219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 608
Target Start/End: Original strand, 371135 - 371226
Alignment:
Q  517 agctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgagg 608  Q
    |||||||||||  |||||||||||||||||||||| |    ||||||  |||||||||||||| |  ||||||||||||| |||||||||||    
T  371135 agctgcaaattcaggaaaattgaagcaaacattataaggtattcatctcttaaccatgaattgtgagccaaatagagagattttaattgagg 371226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 609
Target Start/End: Original strand, 547038 - 547220
Alignment:
Q  430 gataagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaatac---cttctgatatctgtatg-gaagaagtcaaatcaagcagctgcaaa 525  Q
    ||||||||||||||| | |||||||||||| |||||||||| || |||||||   |||| ||||| | || |  || || | ||||||||||| ||||||    
T  547038 gataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgt-tacgacaataacttaaatcaagcagttgcaaa 547136  T
Q  526 ttggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgaggg 609  Q
    |||||||| || |||| ||||||| |||| ||||||||  |||  ||||||||     |||||| ||||||||| |||||||||    
T  547137 ttggggaacatggaaggaaacattttgatgctttcatctcttatgcatgaatttttagccaaatggagagacttcaattgaggg 547220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 554
Target Start/End: Complemental strand, 55908696 - 55908575
Alignment:
Q  436 ttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttct---gatatctgtatggaagaag-tcaaatcaagcagctgcaaattgggg 531  Q
    ||||||||  ||| |||||||||| |||||| |||||| ||||||||||||   ||||| | ||||| || || |||||||||| |  ||||||||||||    
T  55908696 ttcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgt-tatggcaggagctcaaatcaagaaattgcaaattgggg 55908598  T
Q  532 aaaattgaagcaaacattatgat 554  Q
    ||||| |||||||||| ||||||    
T  55908597 aaaatggaagcaaacaatatgat 55908575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 554
Target Start/End: Original strand, 1600623 - 1600671
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgat 554  Q
    ||||||||||||| ||||||||||| ||| | |||||||||||||||||    
T  1600623 tcaaatcaagcagttgcaaattgggaaaattggaagcaaacattatgat 1600671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 551
Target Start/End: Original strand, 570737 - 570780
Alignment:
Q  508 aaatcaagcagctgcaaattggggaaaattgaagcaaacattat 551  Q
    |||||||| || ||||||||||||||||| ||||||||||||||    
T  570737 aaatcaagtagttgcaaattggggaaaatggaagcaaacattat 570780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 1548619 - 1548557
Alignment:
Q  281 ccaaatgaatttctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtga 343  Q
    |||||| ||||||||||||| | |  || |||||| | |||||||||||||||||||||||||    
T  1548619 ccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtga 1548557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 548
Target Start/End: Complemental strand, 3438457 - 3438419
Alignment:
Q  510 atcaagcagctgcaaattggggaaaattgaagcaaacat 548  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  3438457 atcaagcagctgcaaattggggaaaatagaagaaaacat 3438419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 3438548 - 3438498
Alignment:
Q  422 aacaacctgataagttcaaatgcttaatcttacaacatttccttaaaactt 472  Q
    ||||||| | ||||||||||||  |||||||||||||| ||||||||||||    
T  3438548 aacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaactt 3438498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 566101 - 566158
Alignment:
Q  289 atttctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgacat 346  Q
    |||||||||||| |||| || ||||| ||||  |||||||||||||||||||| ||||    
T  566101 atttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 566158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 644746 - 644799
Alignment:
Q  292 tctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgaca 345  Q
    ||||||||| |||| |||||||| |||| |||||||||||| ||||| ||||||    
T  644746 tctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 1600295 - 1600336
Alignment:
Q  222 aagaaggcatccacgacgcgagaagaatttcctcttttcgtc 263  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  1600295 aagaaggcatccatgactcgagaagaatttcctattttcgtc 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 12121641 - 12121588
Alignment:
Q  292 tctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgaca 345  Q
    ||||| ||| |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  12121641 tctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgaca 12121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 546846 - 546882
Alignment:
Q  310 ttttctaccatatgtttcactcccttctctgtgacat 346  Q
    ||||||| || ||||||||||||||||||||||||||    
T  546846 ttttctagcacatgtttcactcccttctctgtgacat 546882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 6006455 - 6006495
Alignment:
Q  432 taagttcaaatgcttaatcttacaacatttccttaaaactt 472  Q
    ||||||||||||  ||||||||| |||||||||||||||||    
T  6006455 taagttcaaatgtctaatcttactacatttccttaaaactt 6006495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 12121352 - 12121284
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatg 574  Q
    ||||||||||||  ||||||||||||||||  ||||||| | || |||| |||||||| | ||||||||    
T  12121352 tcaaatcaagcaattgcaaattggggaaaacggaagcaatccttttgatgctttcatcttgtaaccatg 12121284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 360 - 611
Target Start/End: Complemental strand, 13470776 - 13470525
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    |||||||||||||||||||||  ||||||| |||||||| || | | ||||||||||||| | ||||   | ||||||||||||| ||||||||||||||    
T  13470776 tgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacat 13470677  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
     ||||||||||||  |||||||||| |||||   |  || || || ||||||||||||||||||||||||||||| | ||||||||||||||||| | ||    
T  13470676 atccttaaaacttgacaaataccttttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatgatgcctt 13470577  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||| ||||||||  |||    |||||||||||||||||||||||||||||    
T  13470576 catcacttaaccattgattttttcccaaatagagagactttaattgagggta 13470525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 360 - 611
Target Start/End: Complemental strand, 51764484 - 51764233
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    ||||||||  |||||||||||| | |||||| ||||||| || | | ||||||||||| |  ||||  | |||| |||||||||| |||||||| |||||    
T  51764484 tgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacat 51764385  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
     ||||||||||||| || | |||||  |||||  |  || ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  51764384 ctccttaaaacttcacagacacctttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgcttt 51764285  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||| ||||||||| |||    |||| ||||||||||||||||||||||||    
T  51764284 catcacttaaccatgtattttcacccagatagagagactttaattgagggta 51764233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 605
Target Start/End: Complemental strand, 51113749 - 51113580
Alignment:
Q  436 ttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaa 535  Q
    ||||||||| |||| ||||||||| || |||||||||  ||||||||||| |||||||    | ||  ||| |||||||| ||||||| |||||||||||    
T  51113749 ttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaagaagctgcagattggggaaaa 51113650  T
Q  536 ttgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattg 605  Q
    | ||||||| ||||||||| || |||||  ||||||||| |||| |  |||| | |||||||||||||||    
T  51113649 tggaagcaatcattatgatgctctcatctcttaaccatggattgtgatccaactggagagactttaattg 51113580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 610
Target Start/End: Complemental strand, 514623 - 514519
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattg 605  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||| |   |||||||  |||| ||||||||| |  ||||||||||||| ||||||||    
T  514623 tcaaatcaattagctgcaaattcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattg 514524  T
Q  606 agggt 610  Q
    |||||    
T  514523 agggt 514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 46926701 - 46926743
Alignment:
Q  88 aacaacacgacattcaaccgcttgcattacattgtacattata 130  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46926701 aacaacacgacattcaaccgcttgcattacattgtacattata 46926743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 51113950 - 51113911
Alignment:
Q  307 catttttctaccatatgtttcactcccttctctgtgacat 346  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  51113950 catttttctaccacatgcttcactcccttctctgtgacat 51113911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 51764766 - 51764737
Alignment:
Q  154 atgagtaaatgcacatttgtaagttgacat 183  Q
    ||||||||||||||||||||||||||||||    
T  51764766 atgagtaaatgcacatttgtaagttgacat 51764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 360 - 608
Target Start/End: Complemental strand, 6589367 - 6589119
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    ||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||| | |||    | ||||||||||||| ||||||||||||||    
T  6589367 tgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacat 6589268  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
     | || || ||||  ||||||||||  ||||| |   |  ||||| | |||||||||| ||  |||||||||||||| |||||||||||||||||  ||     
T  6589267 cttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttg 6589168  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagg 608  Q
    ||||| |||||||||||||    ||||||||||||||||||||||||||    
T  6589167 catcacttaaccatgaatttttacccaaatagagagactttaattgagg 6589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 360 - 611
Target Start/End: Original strand, 6394919 - 6395170
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    ||||||||||||||||||||||  ||||||| ||||||| || | |||||| ||||||||  ||||    | |||||||||||| |||| ||||||||||    
T  6394919 tgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacat 6395018  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
    ||| |||||||||  ||||||||||| ||||| |||  | ||   ||||||||||| ||||| |||||||||||||| |||| ||||||||||||| |||    
T  6395019 ttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatgattattt 6395118  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||  |||||||  ||||    |||||||||||||| ||||| ||||||||    
T  6395119 catctattaaccagtaatttgtacccaaatagagagagtttaactgagggta 6395170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 360 - 611
Target Start/End: Original strand, 6426566 - 6426817
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    |||||| |||||||||||||||  ||||||| ||||||| || | |||||| ||||| ||  ||||    | |||||||||||| |||| ||||||||||    
T  6426566 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacat 6426665  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
    |||||||||||||| ||||||||||| ||||| |    | ||    |||||||||| ||||| |||||||||||||| |||||| ||||||||||  |||    
T  6426666 ttccttaaaacttcacaaataccttcagatatttcacggcaaaccttcaaatcaagtagctgtaaattggggaaaatggaagcatacattatgatgattt 6426765  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||| ||||||||||||| |  |||| |||||||||||| |||||||||||    
T  6426766 catcacttaaccatgaatttctacccagatagagagacttcaattgagggta 6426817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 360 - 611
Target Start/End: Original strand, 6416021 - 6416272
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    |||||||||||||||||||||  |||||||||||||||  || | ||||||||||||||| | ||||   | |||||||||||||  |||||||||||||    
T  6416021 tgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacat 6416120  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
     || |||||||||  ||||||||||| ||||   |  |  ||  | ||||||||||||||||||||||||||||  | |||| |||||||||||| | ||    
T  6416121 atctttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgatacctt 6416220  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||  ||||||||  |||    |||||||||||||||||||||||||||||    
T  6416221 catcgcttaaccatttattttttcccaaatagagagactttaattgagggta 6416272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 360 - 611
Target Start/End: Original strand, 6432216 - 6432467
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    ||||||||||||||||| |||| |||||||| ||||||| || | |||||||||||||||   ||||   | |||||||||||| ||||  |||||||||    
T  6432216 tgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacat 6432315  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaag-aagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctt 558  Q
     ||||||||||||  |||||||||||   |||  | |||  |  ||  |||||||||  | ||||||||||||||||| ||||||||||||||||| |||    
T  6432316 ctccttaaaacttgacaaataccttcatttatacg-atgacaccaacgcaaatcaagatgttgcaaattggggaaaatggaagcaaacattatgatcctt 6432414  T
Q  559 tcatcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||   |||||||||||||| | |||||||||||||||||||| ||||||||    
T  6432415 tcattccttaaccatgaattgtgacccaaatagagagactttaactgagggta 6432467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 360 - 611
Target Start/End: Original strand, 6410061 - 6410312
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    |||| |||||||||||| |||| |||||||| ||||||| || | ||||||||||||||| |  |||   | ||||| ||||||||||| ||||||||||    
T  6410061 tgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttttgcaataggctaagtccaaatgcttaagcttacaacat 6410160  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
    |||  ||||||||  ||||||||||| ||||| ||   | ||   ||||||||||| || || |||||||| ||||| ||||||||||  |||||| |||    
T  6410161 ttctgtaaaacttgacaaataccttcagatatttgctggcaacccgtcaaatcaagtagttgtaaattgggaaaaatggaagcaaacaaaatgattattt 6410260  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||| ||||| ||| ||||    ||||||||||||||||||||||||||||    
T  6410261 catcacttaacgatgtattgtaatccaaatagagagactttaattgagggta 6410312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 360 - 563
Target Start/End: Complemental strand, 6594650 - 6594447
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    |||||||| ||||||||||||  ||||||||| |||||| || | ||||||||||||| |  |||| || ||||||| ||||||  |||||||| |||||    
T  6594650 tgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacat 6594551  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
     ||||||||||||  ||||||||||| ||||| ||   |||| |  ||||||||||||||| |||| |||||||||| |||||||||| ||||||  |||    
T  6594550 ctccttaaaacttgacaaataccttcagatatttgatcggaaaacctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgtttt 6594451  T
Q  560 catc 563  Q
    ||||    
T  6594450 catc 6594447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 359 - 608
Target Start/End: Original strand, 7119211 - 7119460
Alignment:
Q  359 ctgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaaca 458  Q
    |||||||||||||||||||||||  | |||| |||||||| || | | ||||||||||| |  ||||    | |||||||||||| ||||||||| ||||    
T  7119211 ctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaaca 7119310  T
Q  459 tttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctt 558  Q
    | ||||||||||||  ||||||||||| ||||| |   || ||| | |||||||||| || || |||||||||||||  ||||| || ||||  ||| ||    
T  7119311 tctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttt 7119410  T
Q  559 tcatcatttaaccatgaattgcggcccaaatagagagactttaattgagg 608  Q
    |||||| |||||| | |||| |  || ||||||||||||||||| |||||    
T  7119411 tcatcagttaaccgtaaatttctacctaaatagagagactttaactgagg 7119460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 359 - 608
Target Start/End: Original strand, 7131689 - 7131938
Alignment:
Q  359 ctgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaaca 458  Q
    |||||||||||||||||||||||  | |||| |||||||| || | | ||||||||||| |  ||||    | |||||||||||| ||||||||| ||||    
T  7131689 ctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaaca 7131788  T
Q  459 tttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctt 558  Q
    | ||||||||||||  ||||||||||| ||||| |   || ||| | |||||||||| || || |||||||||||||  ||||| || ||||  ||| ||    
T  7131789 tctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttt 7131888  T
Q  559 tcatcatttaaccatgaattgcggcccaaatagagagactttaattgagg 608  Q
    |||||| |||||| | |||| |  || ||||||||||||||||| |||||    
T  7131889 tcatcagttaaccgtaaatttctacctaaatagagagactttaactgagg 7131938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 364 - 611
Target Start/End: Original strand, 14820752 - 14820996
Alignment:
Q  364 aagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacatttcc 463  Q
    |||||||||||||| | | |||||||| ||||||| || | |||||| ||||||    |||||  |  |||||||||||| |||| ||||||||||||||    
T  14820752 aagttcaacacctctaacttgggaactgcaaagttaattccatgtagtttcactcctgaacaaaattctaagttcaaatgtttaagcttacaacatttcc 14820851  T
Q  464 ttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatc 563  Q
    ||||| |||  ||||||||||| |||||  |    |||      |||||||| ||||  ||||| |||||||| |||||| |||  |||||| |||||||    
T  14820852 ttaaaccttgacaaataccttcagatatagga---gaatcttgtaaatcaagtagctttaaatttgggaaaatggaagcatacaaaatgattatttcatc 14820948  T
Q  564 atttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||    
T  14820949 atttaaccatgaattgtgacccaaatagagagacttcaattgagggta 14820996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 432 - 608
Target Start/End: Complemental strand, 10579708 - 10579532
Alignment:
Q  432 taagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattgggg 531  Q
    ||||||||||||||||||||||| |||| | | | ||||||   |||||||||| ||||| | |  | ||| | ||||||||||||||||||||||||||    
T  10579708 taagttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattgggg 10579609  T
Q  532 aaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgagg 608  Q
    ||||  ||||| |||||||| ||  ||||||||  |||| ||||||| |  |||||||||||||| |||||||||||    
T  10579608 aaaaaggaagctaacattataatcatttcatcacgtaacaatgaatttctacccaaatagagagattttaattgagg 10579532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 360 - 611
Target Start/End: Original strand, 6423272 - 6423523
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    |||||||||||||||||||||| ||||||||  |||||| ||   | ||||||||||||  | ||||   | |||||||||||| |||| || || ||||    
T  6423272 tgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcacttgttcacaataggctaagttcaaatgtttaagctcacgacat 6423371  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatgg-aagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctt 558  Q
    |||| |||||| |  |||||||| ||  |||| || |||| ||    |||||||||| || |  ||||| |||||||| |||||||||||||||||  ||    
T  6423372 ttccgtaaaacatgacaaataccatcaaatatttg-atggcaacccttcaaatcaagtagttttaaattagggaaaatggaagcaaacattatgatgatt 6423470  T
Q  559 tcatcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    |||||| ||||||| ||| ||   |||||||||||||||||||||||||||||    
T  6423471 tcatcacttaaccacgaagtgtaacccaaatagagagactttaattgagggta 6423523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 360 - 554
Target Start/End: Complemental strand, 7994226 - 7994032
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    ||||| |||||||||||| ||| | |||||||||||||| || |   ||||||||||| |   |||| | | || |||||||||| | ||||||||||||    
T  7994226 tgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacat 7994127  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgat 554  Q
    ||||||||||| |  ||||||||||| |||||     || ||||| ||||||| |||| ||||||||| |||||||| | |||||||| ||||||    
T  7994126 ttccttaaaacgtaacaaataccttcagatataccattgcaagaattcaaatcgagcatctgcaaatttgggaaaatggtagcaaacaatatgat 7994032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 213 - 343
Target Start/End: Original strand, 19632275 - 19632405
Alignment:
Q  213 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 312  Q
    |||||||||||||||||||||| ||||| || ||| ||||||  ||| ||| ||| |||| | ||||||||||| ||| ||  ||||| || | || |||    
T  19632275 atactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtcacttgaatgaatatcccccaaataaatctccttcagttgtttgcagttt 19632374  T
Q  313 tctaccatatgtttcactcccttctctgtga 343  Q
    |||||||  ||||||||||||||||||||||    
T  19632375 tctaccacgtgtttcactcccttctctgtga 19632405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 611
Target Start/End: Complemental strand, 6603103 - 6602998
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattg 605  Q
    |||||||||| ||||||||| |||||| |   |||||||||||||||||| ||| | || |||||||| |||||   || ||||||||||||||||||||    
T  6603103 tcaaatcaagtagctgcaaactggggatagaagaagcaaacattatgattttttgaacacttaaccataaattgtcacctaaatagagagactttaattg 6603004  T
Q  606 agggta 611  Q
    ||||||    
T  6603003 agggta 6602998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 611
Target Start/End: Original strand, 19632637 - 19632742
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattg 605  Q
    ||||||||||| ||| ||||||||| ||||  ||||| |||||| | ||  |||||||| |||||| | |||| || |||||||||||||||||||||||    
T  19632637 tcaaatcaagccgctacaaattgggaaaaaacgaagcgaacattgtaatcttttcatcacttaaccgtaaatttcgacccaaatagagagactttaattg 19632736  T
Q  606 agggta 611  Q
    ||||||    
T  19632737 agggta 19632742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 359 - 491
Target Start/End: Original strand, 6402914 - 6403046
Alignment:
Q  359 ctgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaaca 458  Q
    |||||||||||||||| || ||   ||||||| ||||||| || | | ||||||||||| |  |||| || | ||||||||||||| |||| ||||||||    
T  6402914 ctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaaca 6403013  T
Q  459 tttccttaaaacttcgcaaataccttctgatat 491  Q
    | ||||||||||||  ||||||||||| |||||    
T  6403014 tctccttaaaacttgacaaataccttcagatat 6403046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 343
Target Start/End: Complemental strand, 6594861 - 6594739
Alignment:
Q  221 aaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccat 320  Q
    ||||||||||||| ||||||||||||| || |||  ||||||| ||||||||  || ||| |||||  |||||||||| | |||| || ||||||||||     
T  6594861 aaagaaggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccac 6594762  T
Q  321 atgtttcactcccttctctgtga 343  Q
    ||||||  |||||| ||||||||    
T  6594761 atgtttggctccctcctctgtga 6594739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 433 - 606
Target Start/End: Complemental strand, 8913955 - 8913783
Alignment:
Q  433 aagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattgggga 532  Q
    ||||||||||| ||||||||||||||| | ||||||||||  ||||||||||  ||||| |      || || | ||||||||||  ||||||||||  |    
T  8913955 aagttcaaatgtttaatcttacaacatcttcttaaaacttgacaaatacctttagatatataatctcaataatt-aaatcaagcatatgcaaattggaaa 8913857  T
Q  533 aaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattga 606  Q
    |||| |||||||||||||||||  |||||||  |||||||  |||||   |||||||| |||||||||||||||    
T  8913856 aaatggaagcaaacattatgatgatttcatccgttaaccacaaattgtcacccaaataaagagactttaattga 8913783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 14800856 - 14800940
Alignment:
Q  9 gagtacaaaaatggtggaggtggtatttgagagtacaacgatggtaaaaataaaactaaaactatgtacacacacatttaacaac 93  Q
    ||||||||| |||||||||||||  |||||| |||||| |  ||||| ||| |||||||  ||||||||||||||||||||||||    
T  14800856 gagtacaaagatggtggaggtggagtttgagggtacaatggcggtaacaatgaaactaatgctatgtacacacacatttaacaac 14800940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 348
Target Start/End: Complemental strand, 6589586 - 6589451
Alignment:
Q  213 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 312  Q
    ||||||| ||||| |||||||| || | ||||||| || |||  ||| ||| |||||||| | |||||||| || ||| |||   |||||||| || |||    
T  6589586 atactagtaaagatggcatccatgatgggagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttt 6589487  T
Q  313 tctaccatatgtttcactcccttctctgtgacataa 348  Q
    ||||||| |||||||||||||| ||| |||||||||    
T  6589486 tctaccacatgtttcactccctcctccgtgacataa 6589451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 346
Target Start/End: Original strand, 6394700 - 6394833
Alignment:
Q  213 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 312  Q
    ||||||||||| | |||||||||||||| | |  | || ||| |||||||| |||| ||  | ||||||||||| ||| ||||||| | |||| || |||    
T  6394700 atactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 6394799  T
Q  313 tctaccatatgtttcactcccttctctgtgacat 346  Q
    ||||||| ||||| ||| ||||| ||||||||||    
T  6394800 tctaccacatgttccacacccttttctgtgacat 6394833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 7994433 - 7994324
Alignment:
Q  225 aaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgt 324  Q
    |||||||||  |||||||||||| || ||| |||| ||| |||| ||| |||||||| |||| ||| ||| ||||| | || || |||||||||| ||||    
T  7994433 aaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgt 7994334  T
Q  325 ttcactccct 334  Q
    ||||||||||    
T  7994333 ttcactccct 7994324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 346
Target Start/End: Original strand, 14820529 - 14820662
Alignment:
Q  213 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 312  Q
    ||||||||||||| | |||||||||||||| | || ||||||  ||| |   |||||||| ||  || |||||| ||| ||||||||  |||| || |||    
T  14820529 atactagcaaagatgacatccacgacgcgatatgagtttcctaattttgagacttaaatgaaaccccgccaaattaatctctctcagctgtgtgcagttt 14820628  T
Q  313 tctaccatatgtttcactcccttctctgtgacat 346  Q
    | ||||| ||||||||| ||||||||||||||||    
T  14820629 tttaccacatgtttcacacccttctctgtgacat 14820662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 546
Target Start/End: Original strand, 9411556 - 9411596
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaac 546  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagcaaac 9411596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 344
Target Start/End: Complemental strand, 10580000 - 10579869
Alignment:
Q  213 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttt-tcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacattt 311  Q
    |||||||||||||||||||||| ||||| ||||||||  ||| ||| || || |||||||  |||||  |||| | ||| ||||| ||| |||| || ||    
T  10580000 atactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc-cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagtt 10579902  T
Q  312 ttctaccatatgtttcactcccttctctgtgac 344  Q
    |||||||| |||||| |||||||||| ||||||    
T  10579901 ttctaccacatgtttaactcccttctttgtgac 10579869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 434 - 611
Target Start/End: Complemental strand, 6596898 - 6596721
Alignment:
Q  434 agttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaa 533  Q
    ||||||||||||||||||||  |||| |||| |||||||  ||||||||||| || || |   |   ||||   || ||||||||||||||||| || ||    
T  6596898 agttcaaatgcttaatcttatcacatctcctgaaaacttgacaaataccttcagaaatgttattattagaatataagtcaagcagctgcaaattaggaaa 6596799  T
Q  534 aattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||  ||||| ||  |||| ||  |||||| | |||||||  |||| |  |||||||||||||||||||||||||||||    
T  6596798 aaaggaagctaatcttataatattttcattacttaaccaaaaatttctacccaaatagagagactttaattgagggta 6596721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 491
Target Start/End: Complemental strand, 6585282 - 6585150
Alignment:
Q  359 ctgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaaca 458  Q
    ||||||||||||| ||||||| |  || ||||| |||||| || | | ||||||||||| |  |||| || |  |||||||||||| |||| ||| ||||    
T  6585282 ctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagtaaagttcaaatgcctaatattaaaaca 6585183  T
Q  459 tttccttaaaacttcgcaaataccttctgatat 491  Q
    | |||||||||| |  ||||||||||| |||||    
T  6585182 tctccttaaaacatgacaaataccttcagatat 6585150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 6603368 - 6603330
Alignment:
Q  310 ttttctaccatatgtttcactcccttctctgtgacataa 348  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  6603368 ttttctaccacatgtttcactcctttctctgtgacataa 6603330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 6423053 - 6423138
Alignment:
Q  213 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctca 298  Q
    |||||||||||||||||||||||||  | ||| || |||| | |||| ||| |||| ||| ||||| ||||||| ||| |||||||    
T  6423053 atactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttacatgaaaatctcccaaataaatctctctca 6423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 6432086 - 6432130
Alignment:
Q  302 gtgtacatttttctaccatatgtttcactcccttctctgtgacat 346  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||    
T  6432086 gtgtgcatttttctaccacaagtttcactcccttctgtgtgacat 6432130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 583 - 611
Target Start/End: Complemental strand, 6585103 - 6585075
Alignment:
Q  583 cccaaatagagagactttaattgagggta 611  Q
    |||||||||||||||||||||||||||||    
T  6585103 cccaaatagagagactttaattgagggta 6585075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 6585419 - 6585367
Alignment:
Q  294 tctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgacat 346  Q
    ||||||| |||| ||  ||||||||| |||||||| |||||||||||||||||    
T  6585419 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacat 6585367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 6597156 - 6597120
Alignment:
Q  218 agcaaagaaggcatccacgacgcgagaagaatttcct 254  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6597156 agcaaagaaggcatccatgacgcaagaagaatttcct 6597120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 360 - 611
Target Start/End: Original strand, 10614648 - 10614899
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    |||||||||||||||||||||  ||||||| |||| ||| || | | ||||||||||||| | ||||   | ||||||||||||| ||||||||||||||    
T  10614648 tgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacat 10614747  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
     ||||||||||||  |||||||||||  |||   |  || ||  | ||||||||||||| ||||||||||||||| | ||||||||| |||| || | ||    
T  10614748 atccttaaaacttgacaaataccttcatataagagattgcaacgattcaaatcaagcagttgcaaattggggaaattggaagcaaactttataatgcctt 10614847  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||  |||||||   |||    |||||||||||||||||||||||||||||    
T  10614848 catcgcttaaccactgattttttcccaaatagagagactttaattgagggta 10614899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 359 - 611
Target Start/End: Complemental strand, 15092196 - 15091944
Alignment:
Q  359 ctgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaaca 458  Q
    ||||||| |||||||||||||||  ||||||| ||||||| || | |||||| |||||  |  |||| || | |||||||||||| |||| |||| ||||    
T  15092196 ctgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataaca 15092097  T
Q  459 tttccttaaaacttcgcaaataccttctgatatctgtat-ggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattct 557  Q
    ||||||||||||||   |||||||||  ||||| | ||| | ||  |  ||||||||| ||||  || ||||||||||| |||||||  ||| ||||  |    
T  15092096 tttccttaaaacttgagaaataccttgagatatgt-tatagcaatgacccaaatcaagtagctctaagttggggaaaatggaagcaagtattctgatgat 15091998  T
Q  558 ttcatcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||||||| ||||||   ||||| |  ||||||||||||||||||||||||||||    
T  15091997 ttcatcacttaaccggtaattgtgagccaaatagagagactttaattgagggta 15091944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 439 - 611
Target Start/End: Complemental strand, 10170095 - 10169923
Alignment:
Q  439 aaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattg 538  Q
    |||||| |||| ||| ||||  ||||||||||||  ||||| ||||| ||||| ||  || ||||  ||||||||| ||||| |||||| || ||||| |    
T  10170095 aaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtgattgcaagagttcaaatcaaacagcttcaaattaggaaaaatgg 10169996  T
Q  539 aagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||| ||||||||||||   ||||||  ||| ||||| ||||    |||||||||||||||| |||||||||||    
T  10169995 aagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaatagagagacttcaattgagggta 10169923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 439 - 611
Target Start/End: Complemental strand, 10177620 - 10177448
Alignment:
Q  439 aaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattg 538  Q
    |||||| |||| ||| ||||  ||||||||||||  ||||| ||||| ||||| ||  || ||||  ||||||||| ||||| |||||| || ||||| |    
T  10177620 aaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtgattgcaagagttcaaatcaaacagcttcaaattaggaaaaatgg 10177521  T
Q  539 aagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgagggta 611  Q
    ||| ||||||||||||   ||||||  ||| ||||| ||||    |||||||||||||||| |||||||||||    
T  10177520 aagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaatagagagacttcaattgagggta 10177448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 346
Target Start/End: Complemental strand, 15092414 - 15092281
Alignment:
Q  213 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 312  Q
    ||||||||||| | ||||||||||||||||||| | ||||||  ||| ||| |||| ||| | || || ||||| ||| ||||||| | |||| || |||    
T  15092414 atactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttt 15092315  T
Q  313 tctaccatatgtttcactcccttctctgtgacat 346  Q
    |||| || |||||||||||||   ||||||||||    
T  15092314 tctagcacatgtttcactcccacttctgtgacat 15092281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 10614398 - 10614427
Alignment:
Q  154 atgagtaaatgcacatttgtaagttgacat 183  Q
    ||||||||||||||||||||||||||||||    
T  10614398 atgagtaaatgcacatttgtaagttgacat 10614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 359 - 609
Target Start/End: Complemental strand, 19468544 - 19468294
Alignment:
Q  359 ctgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaaca 458  Q
    ||||||| ||||||||||||||| |||||||||||||||| |  | | |||| |||||| |  ||||    | |||||| |||||| |||| ||| ||||    
T  19468544 ctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagtttaaatgcctaatattagaaca 19468445  T
Q  459 tttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctt 558  Q
      ||||||||||||  ||||| ||||| ||||| ||  || | ||  ||||||||||||||||||||||||| ||||| |||||||||||||||||  ||    
T  19468444 cctccttaaaacttgacaaatgccttccgatatgtggttgcatgagttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttt 19468345  T
Q  559 tcatcatttaaccatgaattgcggcccaaatagagagactttaattgaggg 609  Q
    |||||  |||||||||||||     |||| |||||| ||||||||||||||    
T  19468344 tcatcgcttaaccatgaattctcagccaagtagagatactttaattgaggg 19468294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 608
Target Start/End: Original strand, 9586844 - 9586942
Alignment:
Q  510 atcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgagg 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| |||  ||||||||  |||||| |||||||  |||||||| ||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaagagacttcaattgagg 9586942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 510 - 609
Target Start/End: Original strand, 9581276 - 9581375
Alignment:
Q  510 atcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgaggg 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| |||  |||| |||  |||| | |||||||  ||||||||||||||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaacattgattgtgacccaaatcaagagactttaattgaggg 9581375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 28524911 - 28525035
Alignment:
Q  12 tacaaaaatggtggaggtggtatttgagagtacaacgatggtaaaaataaaactaaaactatgt----acacacacatttaacaacacgacattcaaccg 107  Q
    |||||| |||||||||||||  |||||| ||||||||||||||||||||| | |||||||||||    | ||||||||||||||| ||  || ||||| |    
T  28524911 tacaaagatggtggaggtggcgtttgagggtacaacgatggtaaaaataatagtaaaactatgtccacatacacacatttaacaaaacttcactcaactg 28525010  T
Q  108 cttgcattacattgtacattatata 132  Q
    |||||||| ||||| ||||||||||    
T  28525011 cttgcattgcattgcacattatata 28525035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 360 - 608
Target Start/End: Complemental strand, 20478126 - 20477878
Alignment:
Q  360 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 459  Q
    ||||||||||||||||||||||  ||||| ||||| ||| || | | |||||||| || |   ||| || | ||||||||||||| | | ||||||||||    
T  20478126 tgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaagttcaaatgccttaacttacaacat 20478027  T
Q  460 ttccttaaaacttcgcaaataccttctgatatctgtatggaagaagtcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattcttt 559  Q
     || |||| | ||  |||||| |||| |||||  |  || |  |||  ||||||||  | |||||||||||||| || |||||||| ||||| ||| |||    
T  20478026 ctcgttaagaattgacaaatatcttcagatatacgattgcaccaaggaaaatcaagatgttgcaaattggggaacatagaagcaaatattattattattt 20477927  T
Q  560 catcatttaaccatgaattgcggcccaaatagagagactttaattgagg 608  Q
    ||||| ||||||||| |||  | ||||| ||||||||||| ||| ||||    
T  20477926 catcacttaaccatggattatgacccaagtagagagacttcaatcgagg 20477878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 608
Target Start/End: Original strand, 28525213 - 28525314
Alignment:
Q  507 caaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattga 606  Q
    ||||| ||||| || ||||||| ||||||| ||||||||| |||||||  |||| ||  ||||||||||||||   | ||||| ||||||||||||||||    
T  28525213 caaattaagcacctccaaattgtggaaaatggaagcaaaccttatgatattttcgtcccttaaccatgaattgtcacacaaattgagagactttaattga 28525312  T
Q  607 gg 608  Q
    ||    
T  28525313 gg 28525314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 554
Target Start/End: Complemental strand, 41889449 - 41889401
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgat 554  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  41889449 tcaaatcaagtagctgcaaattagggaaaatggaagcaaacattatgat 41889401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 554
Target Start/End: Complemental strand, 41901433 - 41901385
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgat 554  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  41901433 tcaaatcaagcagctgcaaattggggaaaatggaagcgaacattgtgat 41901385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 472
Target Start/End: Complemental strand, 41889594 - 41889486
Alignment:
Q  364 aagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacatttcc 463  Q
    ||||||||||||||||   ||||||||  |||||| ||   | ||||||||||| |  |||| || |||||||||||||   |||| ||||||||| |||    
T  41889594 aagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgttacaacatatcc 41889495  T
Q  464 ttaaaactt 472  Q
    |||||||||    
T  41889494 ttaaaactt 41889486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 508 - 609
Target Start/End: Complemental strand, 17627952 - 17627851
Alignment:
Q  508 aaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgag 607  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||  |||||||   || | ||||||||    ||||||||||||| ||||||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgag 17627853  T
Q  608 gg 609  Q
    ||    
T  17627852 gg 17627851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 506 - 609
Target Start/End: Complemental strand, 18315168 - 18315065
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattg 605  Q
    |||||||||||| |||||||||||||||||| |||| ||| ||| |||| ||||| ||  |||||||||||||||     |||  |||||||||||||||    
T  18315168 tcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttgatgctttcctctcttaaccatgaattgcaagtaaaacggagagactttaattg 18315069  T
Q  606 aggg 609  Q
    ||||    
T  18315068 aggg 18315065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 610
Target Start/End: Complemental strand, 17636290 - 17636188
Alignment:
Q  508 aaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattgag 607  Q
    ||||||||||||||||||||||||||||| | | | | | ||||||  ||||||||  ||||||||||||||     ||||| ||||||||| |||||||    
T  17636290 aaatcaagcagctgcaaattggggaaaatggtatcgagctttatgaggctttcatctcttaaccatgaattgtaaggcaaatggagagacttaaattgag 17636191  T
Q  608 ggt 610  Q
    |||    
T  17636190 ggt 17636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 32151502 - 32151576
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgc 580  Q
    ||||||||||||| |||||||| |||||||| |||||||||||| ||||  | ||||   |||||||||||||||    
T  32151502 tcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatgttatcatatgttaaccatgaattgc 32151576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 554
Target Start/End: Complemental strand, 1037632 - 1037511
Alignment:
Q  436 ttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttct---gatatctgtatggaagaag-tcaaatcaagcagctgcaaattgggg 531  Q
    ||||||||  ||| |||||||||| ||||||||||||| ||||||||||||   ||||| | ||||| || || |||||||||| |  ||||||||||||    
T  1037632 ttcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgt-tatggcaggagctcaaatcaagaaattgcaaattgggg 1037534  T
Q  532 aaaattgaagcaaacattatgat 554  Q
    ||||| |||||||||| ||||||    
T  1037533 aaaatggaagcaaacaatatgat 1037511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 609
Target Start/End: Complemental strand, 32785670 - 32785567
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaatagagagactttaattg 605  Q
    |||||||||| || ||||||||||  ||||| |||| ||||||  |||| ||||||||  |||||||  |||||||  |||||| |||| ||||||||||    
T  32785670 tcaaatcaagtagttgcaaattggaaaaaatagaagaaaacatcctgatgctttcatctcttaaccaataattgcgagccaaatggagaaactttaattg 32785571  T
Q  606 aggg 609  Q
    ||||    
T  32785570 aggg 32785567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 43277431 - 43277373
Alignment:
Q  433 aagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatat 491  Q
    |||||||||||| |||| ||||||||| ||||||||||||||  ||||| ||| |||||    
T  43277431 aagttcaaatgcgtaattttacaacatctccttaaaacttcgacaatacattcagatat 43277373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 45245251 - 45245215
Alignment:
Q  310 ttttctaccatatgtttcactcccttctctgtgacat 346  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  45245251 ttttctaccacatgtttcactcccttatctgtgacat 45245215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 554
Target Start/End: Original strand, 645 - 693
Alignment:
Q  506 tcaaatcaagcagctgcaaattggggaaaattgaagcaaacattatgat 554  Q
    |||||||||| ||||||||||| ||||| | ||||||||||||| ||||    
T  645 tcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgat 693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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