View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_high_8 (Length: 382)
Name: NF9812_high_8
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 119 - 372
Target Start/End: Original strand, 24878784 - 24879037
Alignment:
| Q |
119 |
atgtcacacagatgcagacatggagagtgagtggaaagctaatcaggtatcaccaaattgtccaagatgtggttcttcaaacacaaaattctgctactac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24878784 |
atgtcacacagatgcagacatggagagtgagtggaaagctaatcagatatcaccaaattgtccaagatgtggttcttcaaacacaaaattctgctactac |
24878883 |
T |
|
| Q |
219 |
aataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaaatgttcctgttggtggtggct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24878884 |
aataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaaatgttcctgttggtggtggct |
24878983 |
T |
|
| Q |
319 |
gcagaaaaaacagaagaggtaacaacaaaaccttagtaagacatcgatcctttg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24878984 |
gcagaaaaaacagaagaggtaacaacaaaaccttagtaagacatcgatcctttg |
24879037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 24878597 - 24878665
Alignment:
| Q |
18 |
gatatcacttctaggaccacatatataactcaactatgtagcgttgtcactttctgttaacatttccct |
86 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24878597 |
gatatcacttcttggaccacatatataactcaactatgtagcattgtcactttctgttaacatttccct |
24878665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 34645998 - 34646130
Alignment:
| Q |
198 |
aacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaa |
297 |
Q |
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|
||||||||||| || |||||||| ||||| || || || |||||||||||||| |||||| ||| |||||||||||||| ||||||||||| | |||| |
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| T |
34645998 |
aacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaa |
34646097 |
T |
|
| Q |
298 |
atgttcctgttggtggtggctgcagaaaaaaca |
330 |
Q |
| |
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| |||||||||||||||| | |||||||||| |
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| T |
34646098 |
acattcctgttggtggtggttcaagaaaaaaca |
34646130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 28437310 - 28437422
Alignment:
| Q |
177 |
tgtccaagatgtggttcttcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattgga |
276 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||||||| |||||||| | |||||||||||| |||| |||||| ||||||||| ||||||| |
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| T |
28437310 |
tgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattgga |
28437409 |
T |
|
| Q |
277 |
caaaaggtggatc |
289 |
Q |
| |
|
|||| |||||||| |
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|
| T |
28437410 |
caaatggtggatc |
28437422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 9593671 - 9593553
Alignment:
| Q |
198 |
aacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaa |
297 |
Q |
| |
|
||||||||||| || || || || |||||||| | || ||||||||||| |||||||| ||| |||||||||||||| |||| ||||| || |||| |
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| T |
9593671 |
aacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtattggactgaaggaggatctctaagaa |
9593572 |
T |
|
| Q |
298 |
atgttcctgttggtggtgg |
316 |
Q |
| |
|
||||||| ||||| ||||| |
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|
| T |
9593571 |
atgttccagttggaggtgg |
9593553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 13481016 - 13481126
Alignment:
| Q |
177 |
tgtccaagatgtggttcttcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattgga |
276 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||||| ||||| |||||||| ||||||||| |||| |||||| ||| ||||| ||||||| |
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|
| T |
13481016 |
tgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattgga |
13481115 |
T |
|
| Q |
277 |
caaaaggtgga |
287 |
Q |
| |
|
||||||||||| |
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| T |
13481116 |
caaaaggtgga |
13481126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 330
Target Start/End: Original strand, 35202318 - 35202471
Alignment:
| Q |
177 |
tgtccaagatgtggttcttcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattgga |
276 |
Q |
| |
|
|||||| | |||| ||| |||||||| |||||||| ||||| |||||||| || ||| | ||||||||| | || ||||||| || | ||| ||||||| |
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|
| T |
35202318 |
tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga |
35202417 |
T |
|
| Q |
277 |
caaaaggtggatccctcagaaatgttcctgttggtggtggctgcagaaaaaaca |
330 |
Q |
| |
|
||| ||||||| | || ||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
35202418 |
caagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaaca |
35202471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 39741065 - 39741202
Alignment:
| Q |
198 |
aacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaa |
297 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| | ||||| ||||||||||| |||||| ||||||||||||||||| ||||||||| | | || | |
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|
| T |
39741065 |
aacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaagga |
39741164 |
T |
|
| Q |
298 |
atgttcctgttggtggtggctgcagaaaaaacagaaga |
335 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| |||| |
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|
| T |
39741165 |
atgttcctgttggaggtggatgcagaaaaaacaaaaga |
39741202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 3945986 - 3945851
Alignment:
| Q |
195 |
tcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctca |
294 |
Q |
| |
|
||||||||||| || || |||||||| |||||||| || | ||||||||| |||| || |||| |||| | | |||||||||| |||||| | || | |
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|
| T |
3945986 |
tcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactctta |
3945887 |
T |
|
| Q |
295 |
gaaatgttcctgttggtggtggctgcagaaaaaaca |
330 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||| |
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|
| T |
3945886 |
gaaatgttcctgttggtggtggttacagaagaaaca |
3945851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 329
Target Start/End: Complemental strand, 41086277 - 41086143
Alignment:
| Q |
195 |
tcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctca |
294 |
Q |
| |
|
|||||||| |||||||| |||||||| || |||||||| | || ||| | |||||||||||||| || ||| | |||||||| |||||||| || || |
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|
| T |
41086277 |
tcaaacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctcttc |
41086178 |
T |
|
| Q |
295 |
gaaatgttcctgttggtggtggctgcagaaaaaac |
329 |
Q |
| |
|
| |||||||||||||||||||||||| | |||||| |
|
|
| T |
41086177 |
ggaatgttcctgttggtggtggctgccgcaaaaac |
41086143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 41895808 - 41895945
Alignment:
| Q |
198 |
aacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaa |
297 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| | | |||||||| || ||||||||| || |||||||||||||| ||||||| || | |||| |
|
|
| T |
41895808 |
aacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgtagaaggtattggactgaaggtggttctttaagaa |
41895907 |
T |
|
| Q |
298 |
atgttcctgttggtggtggctgcagaaaaaacagaaga |
335 |
Q |
| |
|
|||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
41895908 |
atgttcctgtaggtggtggttcaagaaaaaacaaaaga |
41895945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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