View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_11 (Length: 370)
Name: NF9812_low_11
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 9234856 - 9234503
Alignment:
| Q |
19 |
gtattacgggtcaagagtcaagaaaaaaggattgaaggatagaagttttgatgtcatattcattttcacataccaacagttttactgacccagtttcttg |
118 |
Q |
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| T |
9234856 |
gtattaggggtcaagagtcaagaaaacaggattgaaggaaagaagttttgatgtcatattcattttcacataccaacagttttactgacccagtttcttg |
9234757 |
T |
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| Q |
119 |
cttccgtttcaactctaatgatttctggaacctcgaccatataaagaacaaatatttaggcagattttgttgagctaaccgattcataaccaaataaaaa |
218 |
Q |
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| T |
9234756 |
cttccgtttcaactctaatgatttccggaacctcgaccgtataaagaacaaatatttaggcagattttgttgagctaaccgattcataaccaaataaaaa |
9234657 |
T |
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| Q |
219 |
cataagatgataaatagttgggacaaagacaagac--agtataaaacaaagtaaatatcatttattcaaatctagagaaacacaggaacacaccatgaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9234656 |
cataagatgataaatagttgggacaaagacaagacagagtatacaacaaagtaaatatcatttattcaaatctagagaaacacaggaacacaccatgaaa |
9234557 |
T |
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| Q |
317 |
aactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaata |
370 |
Q |
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| T |
9234556 |
aactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaata |
9234503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 9246024 - 9245943
Alignment:
| Q |
289 |
tagagaaacacaggaacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaata |
370 |
Q |
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| T |
9246024 |
tagagaaacacaataacacactacgacaaagtcatggaaccttcccaagaaccatatcaccttatagttgatgacttcaata |
9245943 |
T |
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