View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_16 (Length: 290)
Name: NF9812_low_16
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 35182744 - 35182486
Alignment:
| Q |
14 |
gaacctgtgagtgtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcga |
113 |
Q |
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| T |
35182744 |
gaacttgtgagtgtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcga |
35182645 |
T |
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| Q |
114 |
gtgctgctggagcctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcggg |
213 |
Q |
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| T |
35182644 |
gtgctgctggagcctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcggg |
35182545 |
T |
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| Q |
214 |
aagaggacgaaggctaagataccagattgttcctcgctcccgcactactgggatattaa |
272 |
Q |
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| T |
35182544 |
aagaggacgaaggctaagataccagattgttcctcgctcccgcactactgggatattaa |
35182486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 35178763 - 35178519
Alignment:
| Q |
26 |
gtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgctgctggag |
125 |
Q |
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||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35178763 |
gtgtgttggttcgaaatccggggctggatcaacacgatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgcttctggaa |
35178664 |
T |
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| Q |
126 |
cctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcgggaagaggacgaag |
225 |
Q |
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| T |
35178663 |
cctatggatttgagtatcagccatgtgaagcctccattgtcattgctggaggtgatactgtggagcgaaatgtattcttggatgtggaaagaggacgaag |
35178564 |
T |
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| Q |
226 |
gctaagataccagattgttcctcgctcccgcactactgggatatt |
270 |
Q |
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| T |
35178563 |
gctaagataccagattgttcatcgcttccgtactactgggatatt |
35178519 |
T |
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