View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_18 (Length: 283)
Name: NF9812_low_18
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 27727107 - 27726841
Alignment:
| Q |
1 |
tactaacagaaaatatgtggagaatgaaagttagatttcnnnnnnngtagggtctaacagtaaaattttaaagagtgtattcagggctttgttcacatga |
100 |
Q |
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| T |
27727107 |
tactaacagaaaatatgtggagaatgaaagttagatttctttttttgtagggtctaacagtaaaattttaaagagtgtattcagggctttgttcacatga |
27727008 |
T |
|
| Q |
101 |
gagattcaactaaaacata-gattaacaagtttttaacatatgcaacacttttcaagctgagtgaaaagtagtgagcaaaaataaaagatagaatttggt |
199 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27727007 |
gagattcaactaaaacataagattaacaagtttttaacatatgcaacacttttcaagctgagtgaaaagtagtgagcaaaaataaaagatagaatttggt |
27726908 |
T |
|
| Q |
200 |
gtcaaatcagtatgggatttcattcataatagaagaataattctaactataaaaaatgggatatttt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27726907 |
gtcaaatcagtatgggatttcattcataatagaagaataattctaactataaaaaatgagatatttt |
27726841 |
T |
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