View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9812_low_19 (Length: 258)
Name: NF9812_low_19
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_19 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 22643114 - 22642888
Alignment:
| Q |
22 |
caagaaacattattagaaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggttttt |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22643114 |
caagaaacattattggaaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtggattttt |
22643015 |
T |
|
| Q |
122 |
ctcaaattgctcccttgaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
22643014 |
ctcaaattgctcccttgaaatgttggatccatcttcaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttggcattgtttgca |
22642915 |
T |
|
| Q |
222 |
gcagcaccattattgccatttcctttg |
248 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
22642914 |
gcagcaccattattgtcatttcctttg |
22642888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 49058770 - 49058546
Alignment:
| Q |
27 |
aacattattagaaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
49058770 |
aacattattagaaaaagaaattaactagc-agctaattcttcttgttatctttttgagcagtatgcaaatcagcaaaatagccttgtgggtttttcacaa |
49058672 |
T |
|
| Q |
127 |
attgctcccttgaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgcagc--- |
223 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49058671 |
attcctcccttgaaatgttggatccatttccaccaggagctttcattgtatcacccttagtggtactgccaacgttgtccttgggattgtttgcagcagc |
49058572 |
T |
|
| Q |
224 |
agcaccattattgccatttcctttgc |
249 |
Q |
| |
|
||||||| ||||||||||||||||| |
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|
| T |
49058571 |
agcaccaacattgccatttcctttgc |
49058546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 4569543 - 4569340
Alignment:
| Q |
27 |
aacattattagaaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | || |||||||||| |
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|
| T |
4569543 |
aacattattagaaaaagaaattaactagctagctaattcttattgttatccttctgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaa |
4569444 |
T |
|
| Q |
127 |
attgctcccttgaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgcagcagc |
226 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| | ||||| ||||| |||||||||||||| || || |
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|
| T |
4569443 |
attgctcccttgaaatgtttgatccatctccaccaggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgctgc |
4569344 |
T |
|
| Q |
227 |
acca |
230 |
Q |
| |
|
|||| |
|
|
| T |
4569343 |
acca |
4569340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 14704693 - 14704490
Alignment:
| Q |
27 |
aacattattagaaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | || ||||||||| |
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|
| T |
14704693 |
aacattattagaaaaagaaattaactagctagctaattcttattgttatccttctgagcagcatgcaaatcagcaaaatagcccttaggacttttctcaa |
14704594 |
T |
|
| Q |
127 |
attgctcccttgaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgcagcagc |
226 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| | ||||| ||||| |||||||||||||| || || |
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|
| T |
14704593 |
attgctcccttgaaatgtttgatccatctccaccaggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgctgc |
14704494 |
T |
|
| Q |
227 |
acca |
230 |
Q |
| |
|
|||| |
|
|
| T |
14704493 |
acca |
14704490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 49042923 - 49042720
Alignment:
| Q |
27 |
aacattattagaaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaa |
126 |
Q |
| |
|
||||||||||||||| |||| ||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49042923 |
aacattattagaaaaggaaactaagtagctagctagttcttcttactatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaa |
49042824 |
T |
|
| Q |
127 |
attgctcccttgaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgcagcagc |
226 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||| |||||||||||||| ||| | |
|
|
| T |
49042823 |
attcctcccttgaaatgttggatccatctccaccaggagctttcattgtatcacctttagtagtagcaccaacattgtctttgggattgtttgctgcacc |
49042724 |
T |
|
| Q |
227 |
acca |
230 |
Q |
| |
|
|||| |
|
|
| T |
49042723 |
acca |
49042720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 9763602 - 9763824
Alignment:
| Q |
27 |
aacattattagaaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaa |
126 |
Q |
| |
|
|||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
9763602 |
aacattattaaaaaaggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaa |
9763701 |
T |
|
| Q |
127 |
attgctcccttgaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgcagcagc |
226 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||| |||||||| | |||| | |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9763702 |
attcctcccttgaaatgttggatccatctcctccaggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtttgcagcagc |
9763801 |
T |
|
| Q |
227 |
accattattgccatttcctttgc |
249 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
9763802 |
accaacattgccatttcctttgc |
9763824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 9778055 - 9778277
Alignment:
| Q |
27 |
aacattattagaaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaa |
126 |
Q |
| |
|
|||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
9778055 |
aacattattaaaaaaggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaa |
9778154 |
T |
|
| Q |
127 |
attgctcccttgaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgcagcagc |
226 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||| |||||||| | |||| | |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9778155 |
attcctcccttgaaatgttggatccatctcctccaggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtttgcagcagc |
9778254 |
T |
|
| Q |
227 |
accattattgccatttcctttgc |
249 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
9778255 |
accaacattgccatttcctttgc |
9778277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 9769753 - 9769964
Alignment:
| Q |
38 |
aaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaaattgctccctt |
137 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||||| |
|
|
| T |
9769753 |
aaaaggaaataaactagctagctaattcttcttcctatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctccctt |
9769852 |
T |
|
| Q |
138 |
gaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgcagcagcaccattattgc |
237 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| | |||| | |||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |
|
|
| T |
9769853 |
gaaatgttggatccatctcctccaggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtttgcagcagaaccaacattgc |
9769952 |
T |
|
| Q |
238 |
catttcctttgc |
249 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9769953 |
catttcctttgc |
9769964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 9783771 - 9783982
Alignment:
| Q |
38 |
aaaaagaaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaaattgctccctt |
137 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||||| |
|
|
| T |
9783771 |
aaaaggaaataaactagctagctaattcttcttcctatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctccctt |
9783870 |
T |
|
| Q |
138 |
gaaatgttggatccatctccaccaggagctttcatcgtatcacctttagtggtactgccaacgttgtccttgggattgtttgcagcagcaccattattgc |
237 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| | |||| | |||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |
|
|
| T |
9783871 |
gaaatgttggatccatctcctccaggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtttgcagcagaaccaacattgc |
9783970 |
T |
|
| Q |
238 |
catttcctttgc |
249 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9783971 |
catttcctttgc |
9783982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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