View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9812_low_21 (Length: 246)
Name: NF9812_low_21
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_21 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 8706006 - 8706250
Alignment:
| Q |
1 |
tgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8706006 |
tgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgaccatgaaagtcaagaaatttttgaaggaattcctgat |
8706105 |
T |
|
| Q |
101 |
gtaaggagttcatccttggtaaatgatgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgtt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8706106 |
gtaaggagttcatccttgataaatgat-atagaaattttgagaacaaagttttggatttaagcctttctacatgaaacatgctgagaacttatatttgtt |
8706204 |
T |
|
| Q |
201 |
ttataggtgagtgaaactttgccagaaataaatatggaatcaatat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8706205 |
ttataggtgagtgaaactttgccagaaataaatatggaatcaatat |
8706250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 8691370 - 8691511
Alignment:
| Q |
28 |
tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat |
127 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
8691370 |
tgatgaaggggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgac |
8691469 |
T |
|
| Q |
128 |
gatagaaattttgagaacaaagttttggatttaaacctttct |
169 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
8691470 |
aatagaaattttgaaaacaaagttttaattttaaacctttct |
8691511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 8744652 - 8744817
Alignment:
| Q |
28 |
tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat |
127 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| | | |||| |||||||| || ||||||||| | ||||||| |||||||||||| |
|
|
| T |
8744652 |
tgatgtaggggagtcaagtagacacatgagctctcactacgaaaatcaagaaacattagaaggaatttcaaatgtaagaagttcatccttg--------- |
8744742 |
T |
|
| Q |
128 |
gatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgtttta |
203 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| || || |||||| ||||||| |||||||||| |||||||| |
|
|
| T |
8744743 |
-atagaaattttgaaaacaaagttttggctttacacaatttcacatgaaacatgctaagaacttatacttgtttta |
8744817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 8724900 - 8724978
Alignment:
| Q |
127 |
tgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgttttata |
205 |
Q |
| |
|
||||||||||||| | | | |||| |||| |||| ||||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
8724900 |
tgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttata |
8724978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University