View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_23 (Length: 242)
Name: NF9812_low_23
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_23 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 184344 - 184121
Alignment:
| Q |
19 |
attagactcaccagacagaaagaaccgaggtttcaagttgaggattaggtaaaagcccggcaattaaaataagaatctcaaaggaccaccattcaaaact |
118 |
Q |
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| T |
184344 |
attagactcaccagacagaaagaaccgaggtttcaagttgaggattaggtaaaagcccggcaattaaaataagaatctcaaaggaccaccattcaaaact |
184245 |
T |
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| Q |
119 |
acacaatattgtatgaaaattgaaattagtagaagaaaactaaaatgaaatgaagcagcattgttttataatgagatattataatttaccaaaacatgag |
218 |
Q |
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| T |
184244 |
acacaatattgtatgaaaattgaaattagtagaagaaaactaaaatgaaatgaagcagcattgttttataatgagatattataatttaccaaaacatgag |
184145 |
T |
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| Q |
219 |
tccagaaggaatagcatatttgca |
242 |
Q |
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| T |
184144 |
tccagaaggaatagcatatttgca |
184121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 36214845 - 36214637
Alignment:
| Q |
35 |
agaaagaaccgaggtttcaagttgaggattaggtaaaagcccggcaattaaaataagaatctcaaaggaccaccattcaaaactacacaatattgtatga |
134 |
Q |
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| T |
36214845 |
agaaagaaccgaggtttcaagttgatgattagatcatagcccgacaattaatataagaaactcagaggaccaccatccaaaactacacaatattgtatga |
36214746 |
T |
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| Q |
135 |
aaattgaaattagtagaagaaaactaaaatgaaatgaagcagcattgtttta-taatgagatattataatttaccaaaacatgagtccagaaggaatagc |
233 |
Q |
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| T |
36214745 |
agattgaaattagtaaaagaagattaaaatgaaataaagcagcattattttactaaagagatattatagtttaccaaaacatgagtccaaaaggaatagc |
36214646 |
T |
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| Q |
234 |
atatttgca |
242 |
Q |
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| T |
36214645 |
atatttgca |
36214637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 31752420 - 31752515
Alignment:
| Q |
24 |
actcaccagacagaaagaaccgaggtttcaagttgaggattaggtaaaagcccggcaattaaaataagaatctcaaaggaccaccattcaaaacta |
119 |
Q |
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| T |
31752420 |
actcaccacactgaaagaactgaggtttcgagctgcgaattaggtaaaagcccggcaacgattgtaagtatctcaaatgaccaccattcaagacta |
31752515 |
T |
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