View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9812_low_24 (Length: 240)
Name: NF9812_low_24
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 37609605 - 37609393
Alignment:
| Q |
16 |
cattatcctcaacactctttccatcagggtagaaataaatggcccaatcgtacccaccaaccgaaaagatatccgacgctatgtatttcccaatcccgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37609605 |
cattatcctcaacactctttccatcagggtagaaataaatggcccaatcgtacccaccaaccgaaaagatatccgacgctatgtatttcccaatcccgat |
37609506 |
T |
|
| Q |
116 |
ccctttcgaaagcgagtacccagtgatcttgaactggtgcgagcctttcactgtttcggttatcgatgtcgacgaagttgtcgccggttccgatgaggaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37609505 |
ccctttcgaaagcgagtacccagtgatcttgaactggtgcgagcctttcactgtttcggttatcgatgtcgaagaagttgtcgccggttccgatgaggaa |
37609406 |
T |
|
| Q |
216 |
gatggtgatgatg |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37609405 |
gatggtgatgatg |
37609393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 32265222 - 32265390
Alignment:
| Q |
16 |
cattatcctcaacactctttccatcagggtagaaataaatggcccaatcgtacccaccaaccgaaaagatatccgacgctatgtatttcccaatcccgat |
115 |
Q |
| |
|
|||||||||| || || || ||||||||||| |||||||| ||||| |||||||||||||| | || || ||||| ||||||||||||||||| || || |
|
|
| T |
32265222 |
cattatcctccacgcttttcccatcagggtaaaaataaatcgcccattcgtacccaccaacggtgaaaatctccgatgctatgtatttcccaattccaat |
32265321 |
T |
|
| Q |
116 |
ccctttcgaaagcgagtacccagtgatcttgaactggtgcgagcctttcactgtttcggttatcgatgt |
184 |
Q |
| |
|
|||||| || || || ||||| || ||||||||| ||| |||||||| | || |||||||||||||| |
|
|
| T |
32265322 |
cccttttgagagtgaataccccgttatcttgaacctgtgtgagcctttgatggtgtcggttatcgatgt |
32265390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University