View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_25 (Length: 239)
Name: NF9812_low_25
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18019227 - 18019002
Alignment:
| Q |
1 |
ttcaaaacacaataacatagttggtgagaaataaggattcggaaaaactgatgatagtaactaaaaagcaaagatggttggattgaatgaaacaaacctt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18019227 |
ttcaaaacacaataacatagttcgtgagaaataaggattcggaaaaactgatgatagtaactaaaaagcaaagatgattggattgaatgaaacaaacctt |
18019128 |
T |
|
| Q |
101 |
aatgtaatcgccggtgaggtgaagcaaacttgtttgactcacaac---attttgtttcaatggcactgccaaagaatgaaatggtcaatgttggtgttca |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18019127 |
aatgtaatcgccggtgaggtgaagcaaacttgtttgactcacaacgttgttttgtttcaatggcactgccaaagagtgaaatggtcaatgttggtgttca |
18019028 |
T |
|
| Q |
198 |
actctaacaataatctaagttataat |
223 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
18019027 |
actctaacaataatctaagttataat |
18019002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3060089 - 3060314
Alignment:
| Q |
1 |
ttcaaaacacaataacatagttggtgagaaataaggattcggaaaaactgatgatagtaactaaaaagcaaagatggttggattgaatgaaacaaacctt |
100 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3060089 |
ttcaaaacacaataacatagttcgtgagaaataaggattcggaaaaactgatgatagtaactaaaaagcaaagatgattggattgaatgaaacaaacctt |
3060188 |
T |
|
| Q |
101 |
aatgtaatcgccggtgaggtgaagcaaacttgtttgactcacaac---attttgtttcaatggcactgccaaagaatgaaatggtcaatgttggtgttca |
197 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3060189 |
aatgtaatcgccggtgaggtgaagcaaacttgtttgactcacaacgttgttttgtttcaatggcactgccaaagagtgaaatggtcaatgttggtgttca |
3060288 |
T |
|
| Q |
198 |
actctaacaataatctaagttataat |
223 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
3060289 |
actctaacaataatctaagttataat |
3060314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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