View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_26 (Length: 239)
Name: NF9812_low_26
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 364237 - 364348
Alignment:
| Q |
1 |
caacaatggaattggaggaacttcaactactaaaactgatttctcagaacaacaatggaactacccttctttccttggcattggcagcacctccagaaaa |
100 |
Q |
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| T |
364237 |
caacaatggaattggaggaacttcaactactaaaactgatttctcagaacaacaatggaactacccttctttccttggcattggcagcacctccagaaaa |
364336 |
T |
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| Q |
101 |
agaagacaacca |
112 |
Q |
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|||||||||||| |
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| T |
364337 |
agaagacaacca |
364348 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 364413 - 364460
Alignment:
| Q |
177 |
acgaccacaacaaaaccacctcctcacttcttccacaaccttcctctt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
364413 |
acgaccacaacaaaaccacctcctcacttcttccacaaccttcctctt |
364460 |
T |
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