View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_28 (Length: 237)
Name: NF9812_low_28
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37170127 - 37170342
Alignment:
| Q |
1 |
ttacagccttaacctacaatgagaaaatgagagcattcatcgcaaccaaattaatatgagaagaatgatacatacgatttgcaagcccttcagatgctgc |
100 |
Q |
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| T |
37170127 |
ttacagccttaacctacaatgagaaaatgagagcattcatcgcaaccaaattaatatgagaagaatgatacatacgatttgcaagcccttcagatgctgc |
37170226 |
T |
|
| Q |
101 |
tttcaacttttccgggttaacatagacatcataccgatcctgacgcaattcattagcagtagaagctgaaaccccatgttttgcttcaggcaattcccac |
200 |
Q |
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| T |
37170227 |
tttcaacttttccgggttaacattgacgtcataccgatcctgacgcaattcattggcagtagaagctgaaaccccatgttttgcttcaggcaattcccac |
37170326 |
T |
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| Q |
201 |
ctgaaacactcaaaac |
216 |
Q |
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|||||||||||||||| |
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| T |
37170327 |
ctgaaacactcaaaac |
37170342 |
T |
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