View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_30 (Length: 233)
Name: NF9812_low_30
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 29195270 - 29195469
Alignment:
| Q |
16 |
ggggagaacttgagtgacgagggagcttggatcaaagtgagcatcaattgttgtggcaaaacccaagataaaaagtaacaaaactaccttcatctatatg |
115 |
Q |
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| T |
29195270 |
ggggagaacttgagtgacgagggagcttggatcaaagtgagcatcaattgttgtggcaaaacccaagataaaaagtaacaaaactaccttcatctatatg |
29195369 |
T |
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| Q |
116 |
atatctattttatccttaattgtatacgacgaagcaaataattggcaggtctatttataggtagatatatatatgaatctgatttgaatgagacctataa |
215 |
Q |
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| T |
29195370 |
atatctattttatccttaattgtatacgaggaagcaaataattggcaggtctatatata--tatatatatatatgaatctgatttgaatgagacctataa |
29195467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 29147659 - 29147706
Alignment:
| Q |
63 |
ttgttgtggcaaaacccaagataaaaagtaacaaaactaccttcatct |
110 |
Q |
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| T |
29147659 |
ttgttgttgccaaacctaagaaaaaaagtaacaaaactaccttcatct |
29147706 |
T |
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