View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_32 (Length: 229)
Name: NF9812_low_32
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43206718 - 43206496
Alignment:
| Q |
1 |
caaaccttgatgcacccatcagctgatgcagtataaacaacaccgtcatcagaaacaacaacagcgttaatagcgtcttcatgagcgttaaaagactcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43206718 |
caaaccttgatgcacccatcagctgatgcagtataaacaacaccgtcatcagaaacaacaacagcgttaatagcgtcttcatgagcgttaaaagactcca |
43206619 |
T |
|
| Q |
101 |
aacaccagttattacctgaagacaagtcccaaatcttgaaagttttatcccatgaaactgagtacatgagtttctctttcttgtttactgctaaaccaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43206618 |
aacaccagttattacctgaagacaagtcccaaatcttgaaagttttatcccatgaaactgagtacatgagtttctctttcttgtttactgctaaaccaga |
43206519 |
T |
|
| Q |
201 |
aactgtatcattatgttggatcc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
43206518 |
aactgtatcattatgttggatcc |
43206496 |
T |
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