View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9812_low_4 (Length: 590)
Name: NF9812_low_4
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Complemental strand, 39898054 - 39897493
Alignment:
| Q |
19 |
aagtagtcatggtttcggttgttcagtaactaagcattcttgcatatgacttacaataagagaaagggcattttctaatggcatcttaagattttgaacc |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39898054 |
aagtagtcatggtttcagttgttcagtaactaagcattcttgtatatgacttacaataagagaaagggcattttctaatggcatcttaagattttgaacc |
39897955 |
T |
|
| Q |
119 |
ttctgatctctactggttactttaattatgtagcattggtgagttaatcgtgcctattgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgag |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39897954 |
ttctgatctctactggtccctttaattatgtagcattggtgagttaatcgtgcctattgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgag |
39897855 |
T |
|
| Q |
219 |
cctgtttaccagaaattaacatttcaagaaagtgaggtatagtacatatccagttgatggtcactaagtctatatcattgagtttcttattgattcattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39897854 |
cctgtttaccagaaattaacatttcaagaaagtgaggtatagtacatatccagttgatggtcactaagtctatatcattgagtttcttattgattcattt |
39897755 |
T |
|
| Q |
319 |
ttccatgaatgcagttagaaaatggtgatattatatgctatcaaaaagcttctgctattgatattgtgaaacatatcctctatcctgatgtgccttcata |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39897754 |
ttccatgaatgcagttagaaaatggtgatattatatgccatcaaaaagcttctgctattgatattgtgaaacatatcctctatcctgatgtgccttcata |
39897655 |
T |
|
| Q |
419 |
cttggaatatgtgcacaataccctggtattttccttttgcggtttaattgaagtcaatttgtttagtctaatgtgattcaaaaacgaaagctacccattt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39897654 |
cttggaatatgtgcacaataccctggtattttccttttgcggtttaattgaagtcaatttgtttagtctaatgtgattcaaaaacgaaagctacccattt |
39897555 |
T |
|
| Q |
519 |
attcttatccttattttaggcttatcttgaatagaacttgattccttgttcaggttcctttg |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39897554 |
attcttatccttattttaggcttatcttgaatagaacttgattccttgttcaggttcctttg |
39897493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 159 - 549
Target Start/End: Complemental strand, 39864529 - 39864142
Alignment:
| Q |
159 |
gagttaatcgtgcctattgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttcaagaaagtgaggtat |
258 |
Q |
| |
|
|||||| || ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
39864529 |
gagttagtcatgcctattgttgtgcaggagattacgtttgaaccaactgtcatgtgtgagcctgtcgacaagaaattaacatttcaagaaagtgaggtat |
39864430 |
T |
|
| Q |
259 |
agtacatatccagttgatggtcactaagt--ctatatcattgagtttcttattgattcatttttccatgaatgcagttagaaaatggtgatattatatgc |
356 |
Q |
| |
|
| ||||| ||||||| |||||||| || ||||||| ||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||| |
|
|
| T |
39864429 |
aacacatacccagttgta---cactaagttactgcatcattggttttcttattgatttatttt-ccgtgagtgcagttagaaaatggtgatattatatgc |
39864334 |
T |
|
| Q |
357 |
tatcaaaaagcttctgctattgatattgtgaaacatatcctctatcctgatgtgccttcatacttggaatatgtgcacaataccctggtattttcctttt |
456 |
Q |
| |
|
| ||| ||||||||| || ||| | ||||||| ||| |||||||||||||| ||||||||||||||||||||||||| || ||||||| | |||| |
|
|
| T |
39864333 |
tttcagaaagcttctaaaatgaataaagagaaacatttccgctatcctgatgtgcgttcatacttggaatatgtgcacaatctccaggtatttccttttt |
39864234 |
T |
|
| Q |
457 |
gcggtttaattgaagtcaatttgtttagtctaatgtgattcaaaaacgaaagctacccatttattcttatccttattttaggcttatcttgaa |
549 |
Q |
| |
|
| |||||||| ||| ||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
39864233 |
gatgtttaattaaaggcaattagtttagtc-gatgtgatgcaaaaatgaaaggtacccatttattcttatcctttttctaggcttaacttgaa |
39864142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 53 - 549
Target Start/End: Original strand, 39736826 - 39737326
Alignment:
| Q |
53 |
cattcttgcatatgacttacaataagagaaagggcattttctaatggcatcttaagattttgaaccttctgatctctactggttactttaattatgtagc |
152 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||| |||||| || |||||| || | || | ||| | ||||||| || |||||||| ||||||| |
|
|
| T |
39736826 |
cattcttgcatatgacttaccacaagggaaagggctttttcttttgtcatctttaggtgctggatcttttaatctctatgggcgactttaatcatgtagc |
39736925 |
T |
|
| Q |
153 |
attggtgagttaatcgtgcct--attgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttcaagaaag |
250 |
Q |
| |
|
|| ||||||||| ||| | |||||||||||||||||| |||||||||||||||| | ||||| |||||| || |||||||||||||| |||||| |
|
|
| T |
39736926 |
gttactgagttaattgtgtgtgtattgttgtgcaggaaattgagtttgaaccaaatgttaaatgtgatcctgttgacaagaaattaacatttacagaaag |
39737025 |
T |
|
| Q |
251 |
tgaggtatagtacatatccagttgatggtcactaagt--ctatatcattgagtttcttattgattcatttttccatgaatgcagttagaaaatggtgata |
348 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||| || ||||||||| |||| |||||||| ||||||||||||||||||| | ||||||| || |
|
|
| T |
39737026 |
caaggtatagtacatacccagtcgatgctcactaagttactttatcattgattttcatattgatttgtttttccatgaatgcagttgaacaatggtgcta |
39737125 |
T |
|
| Q |
349 |
ttatatgctatcaaaaagcttctgctattgatattgtgaaacatatcctctatcctgatgtgccttcatacttggaatatgtgcacaataccctggtatt |
448 |
Q |
| |
|
||||||||| ||| ||||||||||| | |||| | ||||||| ||| |||||| ||||||||||||||| || |||||||||||||| || |||||| |
|
|
| T |
39737126 |
ttatatgctttcagaaagcttctgcagtggataacgagaaacatttccgctatcccgatgtgccttcatacatgaaatatgtgcacaatcgccaggtatt |
39737225 |
T |
|
| Q |
449 |
ttccttttgcggtttaattgaagtcaatttgtttagtctaatgtgattcaaaaacgaaagctacccatttattcttatccttattttaggcttatcttga |
548 |
Q |
| |
|
||| ||||| |||||| || ||| |||| |||| || | ||||||| |||||| ||||||||| |||||||||||||| | || ||||||| |||||| |
|
|
| T |
39737226 |
ttctttttgaggtttatttaaaggaaattagttttgtttgatgtgatgcaaaaatgaaagctacttatttattcttatcccttttctaggcttctcttga |
39737325 |
T |
|
| Q |
549 |
a |
549 |
Q |
| |
|
| |
|
|
| T |
39737326 |
a |
39737326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 171 - 381
Target Start/End: Complemental strand, 39857145 - 39856934
Alignment:
| Q |
171 |
cctattgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttcaagaaagtgaggtatagtacatatcca |
270 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||| || | || ||| |||||||||||||||||||||| | |||| | ||| |
|
|
| T |
39857145 |
cctattgttgtgcaggaaataaagtttaaaccaaatgtcatgtgtttgcctattaagaaggaatcaacatttcaagaaagtgaggta-attacacaccca |
39857047 |
T |
|
| Q |
271 |
gttgatggtcactaagt--ctatatcattgagtttcttattgattcatttttccatgaatgcagttagaaaatggtgatattatatgctatcaaaaagct |
368 |
Q |
| |
|
||||||| ||| |||| || | |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
39857046 |
gttgatgcacaccaagttactgtttcattggttttcttattgatttgtttttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagct |
39856947 |
T |
|
| Q |
369 |
tctgctattgata |
381 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
39856946 |
tatgctattgata |
39856934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 168 - 523
Target Start/End: Complemental strand, 37465690 - 37465333
Alignment:
| Q |
168 |
gtgcctattgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttcaagaaagtgaggtatagtacatat |
267 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |||||||||||| || || ||||||||||||||| || ||| |||||| ||| || |
|
|
| T |
37465690 |
gtgcctatatttgtgtaggaaattaagtttgaaccaaatgtgatgtgtgagcctattgacaagaaattaacatttcgagcaagccaggtatggtatctac |
37465591 |
T |
|
| Q |
268 |
ccagttgatggtcactaagt--ctatatcattgagtttcttattgattcatttttccatgaatgcagttagaaaatggtgatattatatgctatcaaaaa |
365 |
Q |
| |
|
| |||| ||| | || | || ||| ||| ||||||||||||| || |||| ||||||||| | ||| |||| ||||||||||||| ||| || |
|
|
| T |
37465590 |
ctagttaatgcacgttagcttactgtatgatttgctttcttattgatttgttcttccgtgaatgcagcttgaagatggagatattatatgctttcagaag |
37465491 |
T |
|
| Q |
366 |
gcttctgctattgatattgtgaaacatatcctctatcctgatgtgccttcatacttggaatatgtgcacaataccctggtattttccttttgcggtttaa |
465 |
Q |
| |
|
||| |||||| |||| || | ||||||||| |||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||| || |||| |
|
|
| T |
37465490 |
gctcctgctacggataatgaggaacatatccgctatcctgatgtgccttcttacttggaatacgtgcacaatcgccaggtattttccttttgaggattaa |
37465391 |
T |
|
| Q |
466 |
ttgaagtcaatttgtttagtctaatgtgattcaaaaacgaaagctacccatttattct |
523 |
Q |
| |
|
|| ||| |||||||||| || | ||||||| |||||| ||| |||| ||||||||| |
|
|
| T |
37465390 |
ttaaaggcaatttgtttcgtttgatgtgatccaaaaattaaatctacgaatttattct |
37465333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 79 - 466
Target Start/End: Complemental strand, 39847430 - 39847035
Alignment:
| Q |
79 |
agaaagggcattttctaatggcatcttaagattttgaaccttctgatctctactggttactttaattatgtagcattggtgagttaatcgtgcctattgt |
178 |
Q |
| |
|
||||||||| |||||||| ||||||| || ||||||| || |||| | || ||| |||||||||||||||| || ||||| ||| ||||||||||| |
|
|
| T |
39847430 |
agaaagggccttttctaacagcatcttcagtttttgaatctaatgatatgtaaaggtgactttaattatgtagctttactgagtaaattgtgcctattgt |
39847331 |
T |
|
| Q |
179 |
tgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttcaagaaagtgaggtatagtacatatccagttgatgg |
278 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||| ||| || | |||||||||||||| |||| | ||||||||||| ||| ||||||| |
|
|
| T |
39847330 |
tgtgcaggaaattagatttgaaccaaaagtcaagtgttttcctattgagaagaaattaacatttgaagataacgaggtatagtaaatacccagttggcac |
39847231 |
T |
|
| Q |
279 |
tcactaagtctatatcatt------gagtttcttattgattcattttt--ccatgaatgcagttagaaaatggtgatattatatgctatcaaaaagcttc |
370 |
Q |
| |
|
|||||| || |||| | |||||||| |||| |||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
39847230 |
atactaagaaattaacattttaattggttttcttatcgatttatttttttctatgaatgcagttagacaatggtgatattatatgctttcaaaaagcttc |
39847131 |
T |
|
| Q |
371 |
tgctattgatattgtgaaacatatcctctatcctgatgtgccttcatacttggaatatgtgcacaataccctggtattttccttttgcggtttaat |
466 |
Q |
| |
|
|||||| |||| | ||||||||||| ||||||| |||| | ||||||| ||||||||||| ||||| || ||||||||| ||||| | |||||| |
|
|
| T |
39847130 |
tgctatagatactaagaaacatatccgctatcctaatgttctttcatacatggaatatgtgtacaatcgccaggtattttctttttgagatttaat |
39847035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 158 - 436
Target Start/End: Original strand, 38979750 - 38980027
Alignment:
| Q |
158 |
tgagttaatcgtgcctattgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttcaagaaagtgaggta |
257 |
Q |
| |
|
||||||||| |||||| |||| |||||||| | ||||||||||||||||| |||| ||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
38979750 |
tgagttaattgtgcctgttgtattgcaggaagt---gtttgaaccaaatgtcaagtgtctgcctgttgacatgaaattaacatttcaagaaagcgaggta |
38979846 |
T |
|
| Q |
258 |
tagtacatatccagttgatggtcactaagt--ctatatcattgagtttcttattgattcatttttccatgaatgcagttagaaaatggtgatattatatg |
355 |
Q |
| |
|
|||||| | ||||||| |||||||| || || | || | ||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38979847 |
tagtactcacccagttggcacacactaagttactgtacaactggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatg |
38979946 |
T |
|
| Q |
356 |
ctatcaaaaagcttctgctattgatattgtgaaacatatcctctatcctgatgtgccttcatacttggaatatgtgcacaa |
436 |
Q |
| |
|
|| ||| |||| ||| |||| |||||||||||||| ||| || |||||||||| || ||||||||||||||||||||| |
|
|
| T |
38979947 |
ctttcagaaagattcatctatggatattgtgaaacaaatctgctttcctgatgtgagtttatacttggaatatgtgcacaa |
38980027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 158 - 436
Target Start/End: Complemental strand, 39910719 - 39910442
Alignment:
| Q |
158 |
tgagttaatcgtgcctattgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttcaagaaagtgaggta |
257 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| | ||||||||||||||||| |||| ||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
39910719 |
tgagttaattgtgcccattgtattgcaggaagt---gtttgaaccaaatgtcaagtgtctgcctgttgacatgaaattaacatttcaagaaagcgaggta |
39910623 |
T |
|
| Q |
258 |
tagtacatatccagttgatggtcactaagt--ctatatcattgagtttcttattgattcatttttccatgaatgcagttagaaaatggtgatattatatg |
355 |
Q |
| |
|
||||| | ||||||||| |||||||| || || | | | ||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39910622 |
tagtagacatccagttggcacccactaagttactgtacaacaggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatg |
39910523 |
T |
|
| Q |
356 |
ctatcaaaaagcttctgctattgatattgtgaaacatatcctctatcctgatgtgccttcatacttggaatatgtgcacaa |
436 |
Q |
| |
|
|| ||| |||| || |||| |||||||||||||| |||| || || ||||||| |||||||||||||||||||||||| |
|
|
| T |
39910522 |
ctttcagaaagactcatctatggatattgtgaaacaaatcccctttcgtgatgtgtgttcatacttggaatatgtgcacaa |
39910442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 399 - 548
Target Start/End: Complemental strand, 39910437 - 39910288
Alignment:
| Q |
399 |
tatcctgatgtgccttcatacttggaatatgtgcacaataccctggtattttccttttgcggtttaattgaagtcaatttgtttagtctaatgtgattca |
498 |
Q |
| |
|
|||||| ||||| |||||| ||| ||||||||||||||| || ||||||||| |||| |||||| || || |||||||||| ||| |||||||| || |
|
|
| T |
39910437 |
tatccttatgtggcttcatccttcgaatatgtgcacaatcgccaggtattttctgtttgtggtttagttaaaaacaatttgtttcgtcaaatgtgataca |
39910338 |
T |
|
| Q |
499 |
aaaacgaaagctacccatttattcttatccttattttaggcttatcttga |
548 |
Q |
| |
|
|||| |||||||||||||| ||||||||| | || ||||| |||||||| |
|
|
| T |
39910337 |
aaaatgaaagctacccattgattcttatcatgtttctaggcgtatcttga |
39910288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 579
Target Start/End: Complemental strand, 39847018 - 39846942
Alignment:
| Q |
504 |
gaaagctacccatttattcttatccttattttaggcttatcttgaatagaa-cttgattccttgttcaggttccttt |
579 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||| ||| ||| ||||||||| |||||||||| |
|
|
| T |
39847018 |
gaaagctacccatttattcttatcctgtttctaggcttatcttgaactgaatgttgtttccttgtttaggttccttt |
39846942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 36060599 - 36060664
Alignment:
| Q |
178 |
ttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttc |
243 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| || ||| || | ||||| ||||||||| |
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|
| T |
36060599 |
ttgtgcaggagattaagtttgagccaaatgtcatgtgcgaacctattgataagaaagtaacatttc |
36060664 |
T |
|
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