View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_6 (Length: 490)
Name: NF9812_low_6
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 91 - 474
Target Start/End: Complemental strand, 26418674 - 26418297
Alignment:
| Q |
91 |
aactttgtagtgcttgctcacactttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattatt |
190 |
Q |
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| T |
26418674 |
aactttgtagtgcttgctcacactttttgattgaaggtgtgtctagtgtttaacaagtgtcaatgtctgagaccaacacgtgtgattgcattcaattatc |
26418575 |
T |
|
| Q |
191 |
ccatttcttaaaataaattattatcagtgtcgatatgtcagtgttgtgtctgtgt-agtgtttcataggttttatatggttagtggaatttgtaatgcgt |
289 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||| | |
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| T |
26418574 |
ccatttcttaaaataaattattatcagtgtcga-------gtgttgtgtctgtgtcagtgtttcattggtttgatatggttactggaatttgtaatgcat |
26418482 |
T |
|
| Q |
290 |
gctaaagggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtaccagtggttgtttggtt |
389 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26418481 |
gctaaagggtcagtggcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaagttaggtaccagtggttgtttggtt |
26418382 |
T |
|
| Q |
390 |
tgtcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtttatgatgt |
474 |
Q |
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| T |
26418381 |
tgtcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtttatgatgt |
26418297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 26420880 - 26420795
Alignment:
| Q |
17 |
acatttaattaacaaaatggatttgagcttataatagcatatagtataatttatgggttagtcaatgtgttcataactttgtagtg |
102 |
Q |
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| T |
26420880 |
acatttaattaacaaaatggatttgagcttataatagcatatagtataatttatgggttagtcaatgtgttcataactttgtagtg |
26420795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 24 - 470
Target Start/End: Original strand, 27981460 - 27981930
Alignment:
| Q |
24 |
attaacaaaatggatttgagcttataatagcat--------atagtataatttatgggttagtcaatgtgttcataa---ctttgtagtgcttgctcaca |
112 |
Q |
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|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||| ||| | ||| |
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| T |
27981460 |
attaacaaaatggacttgagcttataatagtatcctatactatagtataatttatgggttagtcaacgtgttcataataactctgtagggct--cacact |
27981557 |
T |
|
| Q |
113 |
ctttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattattccatttcttaaaataaattatt |
212 |
Q |
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|||||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
27981558 |
ttttttgatctaaggtgtgtctggtgtctaacacgtgtttgtgtctgagaccgacacatgtgattgcattcaactatcccatttcttcaaataaattatt |
27981657 |
T |
|
| Q |
213 |
atcagtgt-------cgatatgtcagtgttgtgtctg-tgt-agtgt------ttcata---ggttttatatggttagtggaatttgtaatgcgtgctaa |
294 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||||| ||| ||||| ||||||| |
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| T |
27981658 |
atcagtgttgagtatcgatatgtcagtgttgtgtctggtgtcagtgtcataggttcataataggtttgatatggttagtggagtttctaatgtgtgctaa |
27981757 |
T |
|
| Q |
295 |
agggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtac---cagtggttgtttggtttg |
391 |
Q |
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||||| |||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
27981758 |
agggttagtatcctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaagaggatgggtacaagttaggtactggtggtggttgttttgtttg |
27981857 |
T |
|
| Q |
392 |
tcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtttatg |
470 |
Q |
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|||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||| |
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| T |
27981858 |
tcagtgaaggatgatggaggtg------gtgactgtgaaggtctaaggaggtttggttggtctcctgtggtggtttatg |
27981930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 24 - 470
Target Start/End: Original strand, 28067990 - 28068460
Alignment:
| Q |
24 |
attaacaaaatggatttgagcttataatagcat--------atagtataatttatgggttagtcaatgtgttcataa---ctttgtagtgcttgctcaca |
112 |
Q |
| |
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|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||| ||| | ||| |
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| T |
28067990 |
attaacaaaatggacttgagcttataatagtatcctatactatagtataatttatgggttagtcaacgtgttcataataactctgtagggct--cacact |
28068087 |
T |
|
| Q |
113 |
ctttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattattccatttcttaaaataaattatt |
212 |
Q |
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|||||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
28068088 |
ttttttgatctaaggtgtgtctggtgtctaacacgtgtttgtgtctgagaccgacacatgtgattgcattcaactatcccatttcttcaaataaattatt |
28068187 |
T |
|
| Q |
213 |
atcagtgt-------cgatatgtcagtgttgtgtctg-tgt-agtgt------ttcata---ggttttatatggttagtggaatttgtaatgcgtgctaa |
294 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||||| ||| ||||| ||||||| |
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| T |
28068188 |
atcagtgttgagtatcgatatgtcagtgttgtgtctggtgtcagtgtcataggttcataataggtttgatatggttagtggagtttctaatgtgtgctaa |
28068287 |
T |
|
| Q |
295 |
agggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtac---cagtggttgtttggtttg |
391 |
Q |
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||||| |||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
28068288 |
agggttagtatcctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaagaggatgggtacaagttaggtactggtggtggttgttttgtttg |
28068387 |
T |
|
| Q |
392 |
tcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtttatg |
470 |
Q |
| |
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|||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||| |
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| T |
28068388 |
tcagtgaaggatgatggaggtg------gtgactgtgaaggtctaaggaggtttggttggtctcctgtggtggtttatg |
28068460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 1745228 - 1745186
Alignment:
| Q |
154 |
tgtctgagaccaacacatgtgattgcattcaattattccattt |
196 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||| |||||| |
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| T |
1745228 |
tgtctgacaccaacacatgtgattccattcaattatgccattt |
1745186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 27931831 - 27931891
Alignment:
| Q |
127 |
gtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaatt |
187 |
Q |
| |
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||||||||| ||| ||||| ||||| ||||| || |||| ||||||||||| ||||||||| |
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| T |
27931831 |
gtgtgtctgatgtctaacacgtgtctatgtccgaaaccagcacatgtgattacattcaatt |
27931891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 19161069 - 19161121
Alignment:
| Q |
121 |
ttgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgt |
173 |
Q |
| |
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|||||||||||||||||||||| || |||||| | || || |||||||||||| |
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| T |
19161069 |
ttgaaggtgtgtctggtgtttagcatgtgtcagtatcggacaccaacacatgt |
19161121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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