View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9812_low_7 (Length: 465)

Name: NF9812_low_7
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9812_low_7
NF9812_low_7
[»] chr3 (9 HSPs)
chr3 (1-182)||(45346698-45346880)
chr3 (180-308)||(52126884-52127012)
chr3 (337-445)||(52127064-52127171)
chr3 (181-284)||(43399450-43399553)
chr3 (180-253)||(29129129-29129202)
chr3 (186-253)||(53689246-53689313)
chr3 (337-391)||(19009478-19009527)
chr3 (181-253)||(25612614-25612687)
chr3 (180-256)||(44712539-44712616)
[»] chr7 (4 HSPs)
chr7 (181-291)||(24759474-24759584)
chr7 (337-445)||(24759598-24759706)
chr7 (180-253)||(1971091-1971164)
chr7 (181-239)||(13761781-13761839)
[»] chr6 (4 HSPs)
chr6 (180-284)||(18645949-18646053)
chr6 (227-286)||(34008653-34008712)
chr6 (180-282)||(23073408-23073510)
chr6 (184-255)||(8840653-8840724)
[»] chr8 (6 HSPs)
chr8 (181-284)||(8022724-8022827)
chr8 (181-272)||(38681137-38681228)
chr8 (190-272)||(38682400-38682481)
chr8 (181-284)||(26955412-26955515)
chr8 (180-239)||(42313948-42314007)
chr8 (1-70)||(34040328-34040398)
[»] chr2 (4 HSPs)
chr2 (181-283)||(22145614-22145716)
chr2 (181-255)||(26449093-26449167)
chr2 (180-254)||(31409703-31409777)
chr2 (181-260)||(38403355-38403434)
[»] chr4 (20 HSPs)
chr4 (180-284)||(30176039-30176143)
chr4 (185-286)||(11214843-11214943)
chr4 (185-286)||(11225354-11225454)
chr4 (179-254)||(14210418-14210493)
chr4 (179-254)||(14211387-14211462)
chr4 (179-254)||(14212338-14212413)
chr4 (179-254)||(14213307-14213382)
chr4 (179-254)||(14214275-14214350)
chr4 (179-254)||(14215244-14215319)
chr4 (179-254)||(14218115-14218190)
chr4 (179-254)||(14219085-14219160)
chr4 (179-254)||(14220054-14220129)
chr4 (179-254)||(14221005-14221080)
chr4 (179-254)||(14221974-14222049)
chr4 (179-254)||(14222943-14223018)
chr4 (179-254)||(14209467-14209542)
chr4 (179-254)||(14216213-14216288)
chr4 (179-254)||(14217164-14217239)
chr4 (184-239)||(37618987-37619041)
chr4 (179-207)||(14586884-14586912)
[»] chr5 (3 HSPs)
chr5 (180-284)||(40946709-40946813)
chr5 (181-259)||(4077838-4077916)
chr5 (186-280)||(16352103-16352197)
[»] chr1 (4 HSPs)
chr1 (181-253)||(40981594-40981666)
chr1 (180-253)||(29836238-29836311)
chr1 (181-253)||(50290433-50290505)
chr1 (181-239)||(50860118-50860176)
[»] scaffold0005 (1 HSPs)
scaffold0005 (179-207)||(230462-230490)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 45346698 - 45346880
Alignment:
Q  1 taatattaaaaaagagagggtgtaattaattgtcagatttaatgttggtagaaaactggagagattttcactagaga-gatcctcttccctaaatggtag 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  45346698 taatattaaaaaagagagggtgtaattaattgtcagatttaatgatggtagaaaactggagagattttcactagagaagatcctctcccctaaatggtag 45346797  T
Q  100 ggcttagaatttgaactcatcctactttaatatttgagttaaacatagtaatcctttaaattattttgtcacctctgaccaat 182  Q
    || ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  45346798 ggtttagaatttaaactcatcctactttaaaatttgagttaaacatagtaatcctttaacttgttttgtcacctctgaccaat 45346880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 180 - 308
Target Start/End: Original strand, 52126884 - 52127012
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatcta 279  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52126884 aatcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatcta 52126983  T
Q  280 tgttgctccaaatttcaactagctccaaa 308  Q
    |||||||||||||||||||||||||||||    
T  52126984 tgttgctccaaatttcaactagctccaaa 52127012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 337 - 445
Target Start/End: Original strand, 52127064 - 52127171
Alignment:
Q  337 ccaatgcagcaacaaattaatacaaattgatttatacaaggtaccctttcttcttcnnnnnnnnacaaccttttgaaatccgcctagcttcaatcctact 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||    
T  52127064 ccaatgcagcaacaaattaatacaaattgatttatacaaggtaccctttcttctt-ttttttgtacaaccttttgaaatccacctagcttcaatcctact 52127162  T
Q  437 tgcggtcag 445  Q
    |||||||||    
T  52127163 tgcggtcag 52127171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 43399450 - 43399553
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 280  Q
    |||||||||||||||||||||||   | | ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  43399450 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccttaatcctaagtttttggctccaaattgttccagccgttagattaatctat 43399549  T
Q  281 gttg 284  Q
    ||||    
T  43399550 gttg 43399553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 29129129 - 29129202
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaa 253  Q
    |||||||||||||||||||||||||||| | ||||||||||| |  |||||||| ||||  |||||||||||||    
T  29129129 aatcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaa 29129202  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 53689246 - 53689313
Alignment:
Q  186 ttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaa 253  Q
    |||||| ||||||||||||||| | ||||||||||| |  |||||||| ||||  |||||||||||||    
T  53689246 ttatatttaatcctagcaaacatgcttaccctaattgccaaaccctaaacctacttttttggctccaa 53689313  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 19009527 - 19009478
Alignment:
Q  337 ccaatgcagcaacaaattaatacaaattgatttatacaaggtaccctttcttctt 391  Q
    |||||||||||||||||    |||||||||||||||||||||| |||||||||||    
T  19009527 ccaatgcagcaacaaat----acaaattgatttatacaaggta-cctttcttctt 19009478  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 25612614 - 25612687
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagt-ttttggctccaa 253  Q
    ||||||||||||||||  | ||||||| | ||||||||||| | ||||||||| ||||| | ||||||||||||    
T  25612614 atcctttatatctaatggttgcaaacatgcttaccctaattccctaaccctaaacctaattgttttggctccaa 25612687  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 44712616 - 44712539
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaa-gtttttggctccaaatc 256  Q
    |||||||||||| ||||||||||||||| | ||| ||||||| |  |||  |||||||||  ||||||||||||||||    
T  44712616 aatcctttatatataatcctagcaaacatgtttatcctaattaccaaactttaatcctaatttttttggctccaaatc 44712539  T

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Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 24759474 - 24759584
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 280  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatgtttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 24759573  T
Q  281 gttgctccaaa 291  Q
    |||||||||||    
T  24759574 gttgctccaaa 24759584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 337 - 445
Target Start/End: Original strand, 24759598 - 24759706
Alignment:
Q  337 ccaatgcagcaacaaattaatacaaattgatttatacaaggtaccctttcttcttcnnnnnnnnacaaccttttgaaatccgcctagcttcaatcctact 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||| ||||||||||||||||||    
T  24759598 ccaatgcagcaacaaattaatacaaattgatttatacaaggtaccctttcttttttttttttgtacaaccttttgaaatccacctagcttcaatcctact 24759697  T
Q  437 tgcggtcag 445  Q
    |||||||||    
T  24759698 tgcggtcag 24759706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 1971091 - 1971164
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaa 253  Q
    |||| ||||||||||||||||||||||| | |||||||||||||  ||||||||  |||  |||||||||||||    
T  1971091 aatcatttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaatctacttttttggctccaa 1971164  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 13761781 - 13761839
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaa 239  Q
    ||||||||||||||||||||||||||| |   ||||||||| | ||| |||||||||||    
T  13761781 atcctttatatctaatcctagcaaacatgcaaaccctaattgcataaacctaatcctaa 13761839  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 18645949 - 18646053
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatcta 279  Q
    ||||||||||||||||||||||||   | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  18645949 aatcctttatatctaatcctagcagtaatgtttaccctaatttcttaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatcta 18646048  T
Q  280 tgttg 284  Q
    |||||    
T  18646049 tgttg 18646053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 34008653 - 34008712
Alignment:
Q  227 accctaatcctaagtttttggctccaaatcgttccagccgttggattaatctatgttgct 286  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34008653 accctaattctaattttttggctccaaatcgttccagccgttggattaatctatgttgct 34008712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 23073510 - 23073408
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatcta 279  Q
    |||| ||||||||||||||| ||||||| | |||||||||||    |||||||||||||| |||||| |||||||||||||  ||||||  || ||||||    
T  23073510 aatcttttatatctaatccttgcaaacatgcttaccctaattgtcaaaccctaatcctaattttttgtctccaaatcgttctggccgttaaataaatcta 23073411  T
Q  280 tgt 282  Q
    |||    
T  23073410 tgt 23073408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 8840653 - 8840724
Alignment:
Q  184 ctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaat 255  Q
    |||||||||||||||||||||||| | ||||||||||| |  |||| ||| ||||  |||| ||||||||||    
T  8840653 ctttatatctaatcctagcaaacatgcttaccctaattgccaaaccttaaacctattttttcggctccaaat 8840724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 8022724 - 8022827
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 280  Q
    |||||||||||||||||||||||   | | ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  8022724 atcctttatatctaatcctagcagtaatgtttaccctaatttcctaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatctat 8022823  T
Q  281 gttg 284  Q
    ||||    
T  8022824 gttg 8022827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 38681137 - 38681228
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggat 272  Q
    ||||||||||||||||||||||||||| | |||||||| || || |||||||||||||| ||||||||||||||||||||  ||||||||||    
T  38681137 atcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcctaattttttggctccaaatcgttctggccgttggat 38681228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 38682400 - 38682481
Alignment:
Q  190 atctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggat 272  Q
    |||||||||||||||||| | |||||||| || || |||||||||||||| ||||||||||||||||||||  ||||||||||    
T  38682400 atctaatcctagcaaacatgcttacccta-ttgctaaaccctaatcctaattttttggctccaaatcgttctggccgttggat 38682481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 26955412 - 26955515
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 280  Q
    |||||||||||||||| |||||||||| | ||||||||||| |  |||||||||| ||| |||||| ||||||||| |||   ||||| ||| |||||||    
T  26955412 atcctttatatctaattctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttgactccaaatcattctgaccgttagataaatctat 26955511  T
Q  281 gttg 284  Q
    ||||    
T  26955512 gttg 26955515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 42314007 - 42313948
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaa 239  Q
    |||||||||||||||||||| ||||||| |   ||||||||| | |||||||||||||||    
T  42314007 aatcctttatatctaatcctggcaaacatgcaaaccctaattgcctaaccctaatcctaa 42313948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34040328 - 34040398
Alignment:
Q  1 taatattaaaaaaga-gagggtgtaattaattgtcagatttaatgttggtagaaaactggagagattttca 70  Q
    ||||||||||||||| ||  |||||||||||  | |||||||||| ||||||||||| |||||| ||||||    
T  34040328 taatattaaaaaagaagatagtgtaattaatgatgagatttaatgatggtagaaaacaggagagtttttca 34040398  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 22145716 - 22145614
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 280  Q
    |||||||||||||||||||||||   | | ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  22145716 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatctat 22145617  T
Q  281 gtt 283  Q
    |||    
T  22145616 gtt 22145614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 26449093 - 26449167
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaat 255  Q
    ||||||||||||||||||||||||||| | ||||||||||| |  ||||||||| |||| |||||||||||||||    
T  26449093 atcctttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaattctaattttttggctccaaat 26449167  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 31409777 - 31409703
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    |||||||||||| ||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  31409777 aatcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 31409703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 38403355 - 38403434
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttc 260  Q
    |||||||||||||||||||||||   | |   |||||| || |  |||||||||||||| ||||||||||||||||||||    
T  38403355 atcctttatatctaatcctagcagcaatgcaaaccctatttgccaaaccctaatcctaattttttggctccaaatcgttc 38403434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 30176039 - 30176143
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatcta 279  Q
    |||||||||||| |||||||||||   | | ||||||||||||  ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  30176039 aatcctttatatttaatcctagcagtaatgcttaccctaattttctaaccctaatcctaagtttttggctccaaattgtttcagccgttagattaatcta 30176138  T
Q  280 tgttg 284  Q
    |||||    
T  30176139 tgttg 30176143  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 11214843 - 11214943
Alignment:
Q  185 tttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctatgttg 284  Q
    |||||||||||||||||||   | | ||||||||||||||||||||||||||||| |||||||||||||||| || || ||||| |||||||||||||||    
T  11214843 tttatatctaatcctagcagtgatgcttaccctaatttcttaaccctaatcctaa-tttttggctccaaatcattgcaaccgttagattaatctatgttg 11214941  T
Q  285 ct 286  Q
    ||    
T  11214942 ct 11214943  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 11225354 - 11225454
Alignment:
Q  185 tttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctatgttg 284  Q
    |||||||||||||||||||   | | ||||||||||||||||||||||||||||| |||||||||||||||| || || ||||| |||||||||||||||    
T  11225354 tttatatctaatcctagcagtgatgcttaccctaatttcttaaccctaatcctaa-tttttggctccaaatcattgcaaccgttagattaatctatgttg 11225452  T
Q  285 ct 286  Q
    ||    
T  11225453 ct 11225454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14210493 - 14210418
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14210493 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14210418  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14211462 - 14211387
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14211462 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14211387  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14212413 - 14212338
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14212413 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14212338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14213382 - 14213307
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14213382 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14213307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14214350 - 14214275
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14214350 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14214275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14215319 - 14215244
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14215319 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14215244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14218190 - 14218115
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14218190 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14218115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14219160 - 14219085
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14219160 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14219085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14220129 - 14220054
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14220129 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14220054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14221080 - 14221005
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14221080 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14221005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14222049 - 14221974
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14222049 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14221974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14223018 - 14222943
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14223018 caatcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14222943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14209542 - 14209467
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14209542 caatcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14209467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14216288 - 14216213
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||| ||||||||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14216288 caatcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14216213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 14217239 - 14217164
Alignment:
Q  179 caatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaa 254  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||  |||||| | ||||  ||||||||||||||    
T  14217239 caatcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaa 14217164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 37619041 - 37618987
Alignment:
Q  184 ctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaa 239  Q
    |||||||||||||||||||||||| | ||||||||| ||| ||||||||| |||||    
T  37619041 ctttatatctaatcctagcaaacatgcttaccctaa-ttcctaaccctaaacctaa 37618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 14586912 - 14586884
Alignment:
Q  179 caatcctttatatctaatcctagcaaaca 207  Q
    |||||||||||||||||||||||||||||    
T  14586912 caatcctttatatctaatcctagcaaaca 14586884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 40946709 - 40946813
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatcta 279  Q
    |||||||||||||||||||||||||||| | ||||||||||| |  |||||||||| ||| |||||||||||||||| |||  |||||| ||| ||||||    
T  40946709 aatcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttggctccaaatcattctggccgttagataaatcta 40946808  T
Q  280 tgttg 284  Q
    |||||    
T  40946809 tgttg 40946813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 4077838 - 4077916
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgtt 259  Q
    ||||||||||||||||||||||||||| | ||| ||||||| |  |||||||||||| | |||||||||||||||||||    
T  4077838 atcctttatatctaatcctagcaaacatgcttatcctaattgccaaaccctaatccttattttttggctccaaatcgtt 4077916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 16352197 - 16352103
Alignment:
Q  186 ttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 280  Q
    |||||||||||||||||||||| | ||||||||||| |  |||||||||||| | |||||||||||||||||||   |||||| ||| |||||||    
T  16352197 ttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaatccttattttttggctccaaatcgttatggccgttagatgaatctat 16352103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 40981666 - 40981594
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaa 253  Q
    ||||||||||||||||||||||||||| | |||||||||||||  |||||||| ||||  |||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaacctacttttttggctccaa 40981594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 29836238 - 29836311
Alignment:
Q  180 aatcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaa 253  Q
    |||||||||||||||||||||||||||| | ||||||||||| |  |||||||| ||||  |||||||||||||    
T  29836238 aatcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaa 29836311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 50290433 - 50290505
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaagtttttggctccaa 253  Q
    |||||||||||||||||||| |||||| | ||| ||||| |||  |||||||| ||||  |||||||||||||    
T  50290433 atcctttatatctaatcctaacaaacatgcttaacctaaattccaaaccctaaacctatttttttggctccaa 50290505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 50860118 - 50860176
Alignment:
Q  181 atcctttatatctaatcctagcaaacacggttaccctaatttcttaaccctaatcctaa 239  Q
    ||||||||||||||||||||||||||  | ||||||||||| || |||| ||| |||||    
T  50860118 atcctttatatctaatcctagcaaacgtgcttaccctaattgctaaaccttaaacctaa 50860176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 230462 - 230490
Alignment:
Q  179 caatcctttatatctaatcctagcaaaca 207  Q
    |||||||||||||||||||||||||||||    
T  230462 caatcctttatatctaatcctagcaaaca 230490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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