View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_8 (Length: 417)
Name: NF9812_low_8
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 50593951 - 50594350
Alignment:
| Q |
18 |
ggtttcatactacacacttcacttttagttccatatttctcatggaaaatcagtcatcgccgacaccattcgaacacagcttctcttgaacgcgacgaag |
117 |
Q |
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| T |
50593951 |
ggtttcatactacacacttcacttttagttccatatttctcatggaaaatcagtcatcgccgacaccattcgaacacagcttctcttgaacgcgacgaag |
50594050 |
T |
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| Q |
118 |
tttttgttccaaaaccgaaatcaaatgttggatggtatagtaaatacttaaacaatccactaggaagagctttaactcttcttatcacgctcacattagg |
217 |
Q |
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| T |
50594051 |
tttttgttccaaaacctaaatcaaatgttggatggtatagtaaatacttaaacaatccactaggaagagctttaactcttcttatcacgctcacattagg |
50594150 |
T |
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| Q |
218 |
atggcccttatacttagctttcaatgtttccggtagaccttacgatcgattcgcgagtcactatcacccttatgctccaatatattctaagaggggaaga |
317 |
Q |
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| T |
50594151 |
atggcccttatacttagctttcaatgttttcggtagaccttacgatcgattcgcgagtcactatcacccttatgctccaatatattctaagagggaaaga |
50594250 |
T |
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| Q |
318 |
cttcaagtttttgtttctattgcagctgttttagctgctacttatttgctctactttattgcatctttaaaagggtttgtttggttgatatgtgtgtatt |
417 |
Q |
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| T |
50594251 |
cttcaagtttttgtttctattgcagctgttttagctgctacttatttgctctactttattgcatctttaaaagggtttgtttggttgatatgtgtgtatt |
50594350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 341 - 417
Target Start/End: Original strand, 1897024 - 1897100
Alignment:
| Q |
341 |
agctgttttagctgctacttatttgctctactttattgcatctttaaaagggtttgtttggttgatatgtgtgtatt |
417 |
Q |
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| T |
1897024 |
agctgttctaactgctacttatttgctctactttattgcatatttgaaagggcttgcttggttgatatgtgagtatt |
1897100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 23031223 - 23031281
Alignment:
| Q |
69 |
agtcatcgccgacaccattcgaacacagcttctcttgaacgcgacgaagtttttgttcc |
127 |
Q |
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| T |
23031223 |
agtcatcgccgccaccactctaacacaggttctctcgaacgcgatgaggtttttgttcc |
23031281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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