View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_low_9 (Length: 402)
Name: NF9812_low_9
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 33140970 - 33140597
Alignment:
| Q |
20 |
aattgaactcattccggcaacagctttacgcgcagcaggagataatttattctgacaaaccataatcccattatcaacattctccttcaacatcctatta |
119 |
Q |
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| T |
33140970 |
aattgaactcattccagcaacagctttacgcgcagcaggagataatttattctgacaaaccataatcccattatcaacattctccttcaacatcctatta |
33140871 |
T |
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| Q |
120 |
ataatacctctaacaatattaacaccaagtttagcatcatcaaagaagaacacacagattttttcagatgtcttgtttctatgtgttgtgttgatttcta |
219 |
Q |
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| T |
33140870 |
ataatacctctaacaatattaacaccaagtttagcatcatcaaagaagaacacacagattttttcagataggttgtttctatgtgttgtgttgatttcta |
33140771 |
T |
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| Q |
220 |
actgttctcgtttcatgtgttcgccgaatttgaagatgaaatcttctcgagacatggtgagttgggtttcgtcgacgaggtagtttctgtcgaatagcat |
319 |
Q |
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| T |
33140770 |
actgttctcgtttcatgtgttcgccgaatttgaagatgaaatcttctcgagacatggtaagttgggtttcgtcgacgaggtagtttctgtcgaatagcat |
33140671 |
T |
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| Q |
320 |
ttggagaatggttttgcggattctgtatagttttgttatgtcttcatcggtaaacaccattgttgaacctttgc |
393 |
Q |
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| T |
33140670 |
ttggagaatggttttgcggattctgtatagttttgttatgtcttcttcggtaaacaccattgttgaacctttgc |
33140597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 58 - 381
Target Start/End: Complemental strand, 33135047 - 33134724
Alignment:
| Q |
58 |
gagataatttattctgacaaaccataatcccattatcaacattctccttcaacatcctattaataatacctctaacaatattaacaccaagtttagcatc |
157 |
Q |
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| T |
33135047 |
gagataatttagtctgacaaaccaaaatcccactatcaacattctcttgcaacatcctagtaataaaacctctaacaatcttaacaccaagtttagcatc |
33134948 |
T |
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| Q |
158 |
atcaaagaagaacacacagattttttcagatgtcttgtttctatgtgttgtgttgatttctaactgttctcgtttcatgtgttcgccgaatttgaagatg |
257 |
Q |
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|||| ||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33134947 |
atcagagaagaaaacacagattttttcagatgggttgtttctatgtgttttgttgatttctaactgttctcgtttcatgtgttcgccgtatttgaagatg |
33134848 |
T |
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| Q |
258 |
aaatcttctcgagacatggtgagttgggtttcgtcgacgaggtagtttctgtcgaatagcatttggagaatggttttgcggattctgtatagttttgtta |
357 |
Q |
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|||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| | |||||||||| |
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| T |
33134847 |
aaatcttcacgagacatggtgagttcggtttcttcgacgaggtagtttctgtcggataacatttggagaagggttttctggattctgaaaagttttgtta |
33134748 |
T |
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| Q |
358 |
tgtcttcatcggtaaacaccattg |
381 |
Q |
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||||||| |||| ||||||||||| |
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| T |
33134747 |
tgtcttcttcggaaaacaccattg |
33134724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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