View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9813_low_1 (Length: 596)
Name: NF9813_low_1
Description: NF9813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9813_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 90 - 587
Target Start/End: Original strand, 44263183 - 44263702
Alignment:
| Q |
90 |
ttagaaacttttagcatctgctatagatgatcttggttgtttcaatgtagaatagaattattccatagtctt-----gtaatg----------------a |
168 |
Q |
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| T |
44263183 |
ttagaaacttctagcatctgctataaatgatcttggctgtttcaatgtagaatagaattattccatagtcttagcttgtaatgaaaaaaaataaaaatga |
44263282 |
T |
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| Q |
169 |
agaacttacacagtcctagaacactcttggggtgattttgatacactcctacgacacaatacaaaacaaactttaagataccaaacaacattttactaga |
268 |
Q |
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| T |
44263283 |
agaacttacacagtcctagaacactcttggggtgattttgatacactcctacgacacaatacaaaacaaactttaagataccaaacaacattttactaga |
44263382 |
T |
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| Q |
269 |
cgataataaacaaatcatattaaaagcaaattggtacattaaaaatgagtgatattcacaataacgtagcactgtctgactgttgcatacaaagttgagt |
368 |
Q |
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| T |
44263383 |
agataataaacaaatcatattaaaagcaaattggtacattaaaaatgagtaatattcacaataacgtagcactgtctaactgttgcatacaaagctgagt |
44263482 |
T |
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| Q |
369 |
tatgtagtccaagttgtacccccacatctttattgaatttattccaaaatatgtctctatcttacatcatttccaaattcttaactccaataaacactta |
468 |
Q |
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| T |
44263483 |
tatgcagtccaagttgtacccccacatctttattgaatttattccaaaatatgtctctatcttacatcatttccaaattcttatctccaataaacactta |
44263582 |
T |
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| Q |
469 |
tatgacaccttaannnnnnnattttgtta-ttaacattgaaagcctctctatcaggacatagattttctccacttatgaggagtcctacttttgaccaca |
567 |
Q |
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| T |
44263583 |
tatgacaccttaatttttttatttttttatttaacaatgaaagcctctctatcaggacatagattttctccacttatgaggagtcctacttttgaccaca |
44263682 |
T |
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| Q |
568 |
gtactagttttgatgtccat |
587 |
Q |
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| T |
44263683 |
gtactagttttcatgtccat |
44263702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 513
Target Start/End: Original strand, 44260686 - 44260823
Alignment:
| Q |
379 |
aagttgta-cccccacatctttattgaatttattccaaaatatgtctctatcttacatcatttccaaattct---taactccaataaacacttatatgac |
474 |
Q |
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| T |
44260686 |
aagttgtatcccccgcatctttattgaagttattccaaagtaggtcactatcttacattatttccaaagtctttataactccaataaacagttatacaac |
44260785 |
T |
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| Q |
475 |
accttaannnnnnnattttgttattaacattgaaagcct |
513 |
Q |
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| T |
44260786 |
aacttaa-ttttttattttgttattaacaatgaaagcct |
44260823 |
T |
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