View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9813_low_11 (Length: 239)

Name: NF9813_low_11
Description: NF9813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9813_low_11
NF9813_low_11
[»] chr6 (2 HSPs)
chr6 (1-101)||(27966103-27966203)
chr6 (1-99)||(24475333-24475432)
[»] chr2 (11 HSPs)
chr2 (16-101)||(35672587-35672673)
chr2 (1-101)||(13806877-13806978)
chr2 (1-101)||(8360025-8360126)
chr2 (1-101)||(27095533-27095634)
chr2 (1-101)||(7692928-7693029)
chr2 (4-93)||(19793533-19793623)
chr2 (1-101)||(38459401-38459502)
chr2 (41-101)||(24318320-24318380)
chr2 (53-101)||(29650899-29650947)
chr2 (19-93)||(27499621-27499696)
chr2 (22-101)||(11953219-11953299)
[»] chr1 (3 HSPs)
chr1 (1-101)||(21876044-21876145)
chr1 (1-101)||(6183357-6183458)
chr1 (25-100)||(9809558-9809634)
[»] scaffold0003 (3 HSPs)
scaffold0003 (1-101)||(17635-17736)
scaffold0003 (1-101)||(31781-31882)
scaffold0003 (1-101)||(37978-38079)
[»] chr7 (2 HSPs)
chr7 (1-101)||(16428922-16429023)
chr7 (55-101)||(29167146-29167191)
[»] chr4 (5 HSPs)
chr4 (1-101)||(21527148-21527249)
chr4 (1-101)||(4876302-4876403)
chr4 (1-101)||(8777497-8777598)
chr4 (1-101)||(31189044-31189145)
chr4 (41-93)||(26133747-26133799)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-101)||(84335-84436)
[»] scaffold0884 (1 HSPs)
scaffold0884 (1-101)||(593-694)
[»] chr8 (1 HSPs)
chr8 (1-101)||(12464714-12464815)
[»] chr3 (3 HSPs)
chr3 (1-99)||(39291481-39291580)
chr3 (4-99)||(7424165-7424261)
chr3 (21-101)||(9010614-9010695)
[»] chr5 (1 HSPs)
chr5 (1-99)||(31132291-31132390)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27966203 - 27966103
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtag 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27966203 ctgatataaaagctctaagtgtgtatctttcccttcagattttttcctgctgatgtgaaaactaaaacccccttgatgttatatgtatattttgtagtag 27966104  T
Q  101 t 101  Q
    |    
T  27966103 t 27966103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 24475432 - 24475333
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  |||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  24475432 ctgatgtaaaaactcacagtgtgtatctttctcttcagatattttccgtgctgatgtaaaaactaaaacccccttgatgttaaatgtatatttggtagta 24475333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 35672587 - 35672673
Alignment:
Q  16 taagtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 101  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35672587 taagtgtgtatctttcccttcagatatttttcgtgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 35672673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13806877 - 13806978
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    |||||||||||| ||  |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13806877 ctgatgtaaaagttcacagtgtgtatctttccctttagatattttccatgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagta 13806976  T
Q  100 gt 101  Q
    ||    
T  13806977 gt 13806978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8360025 - 8360126
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8360025 ctgatgtaaaaactcacagtgtgtatattttccttcagatatttttcgtgctgatgtgaaaactaaaacccccatgatgttaaatgtatattttgtagta 8360124  T
Q  100 gt 101  Q
    ||    
T  8360125 gt 8360126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 27095533 - 27095634
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttt-tcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    |||||||||||| ||  |||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27095533 ctgatgtaaaagttcacagtgtgtatctttccctttagatatttctcgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagta 27095632  T
Q  100 gt 101  Q
    ||    
T  27095633 gt 27095634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7692928 - 7693029
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  |||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  7692928 ctgatgtaaaaactcacagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgtcgttaaatctatattttgtagta 7693027  T
Q  100 gt 101  Q
    ||    
T  7693028 gt 7693029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 19793533 - 19793623
Alignment:
Q  4 atgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatatttt 93  Q
    |||||||| |||  |||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  19793533 atgtaaaaactcacagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatatttt 19793623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 38459401 - 38459502
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||   |||||||||||| || |||||| |||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||    
T  38459401 ctgatgtaaaaactcactgtgtgtatcttttccatcagatattttccgtgctgatgtgaaaattaaaaccccattgatgttaaatctatattttgtagta 38459500  T
Q  100 gt 101  Q
    ||    
T  38459501 gt 38459502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 24318380 - 24318320
Alignment:
Q  41 tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 101  Q
    |||||| ||||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  24318380 tttttcgtgctgatgtgaaaactaaaacccctatgatgtgaaatgtatattttgtagtagt 24318320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 29650899 - 29650947
Alignment:
Q  53 atgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29650899 atgtgaaaactaaaacccccttgatgttaaatatatattttgtagtagt 29650947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 27499621 - 27499696
Alignment:
Q  19 gtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatatttt 93  Q
    ||||||||||||| | |||| | |||||| |||||||||||||||| ||| |||| |||||| |||||||||||||    
T  27499621 gtgtgtatctttctcatcaggtatttttcgtgctgatgtgaaaactgaaaaccccctgatgtcaaatgtatatttt 27499696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 11953299 - 11953219
Alignment:
Q  22 tgtatctttcccttcagattttttc-ctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 101  Q
    |||||||||||| |||| | ||| | ||||||||||||||||| ||| |||| || ||| ||| ||||||||| |||||||    
T  11953299 tgtatctttcccctcaggtatttcctctgctgatgtgaaaacttaaaaccccatgttgtcaaaagtatattttctagtagt 11953219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 21876044 - 21876145
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21876044 ctgatgtaaaaactcacagtgtgtatctttcccttcagatattttccgtgctgatgtgaaaactaaaccccccttgatgttaaatgtatattttgtagta 21876143  T
Q  100 gt 101  Q
    ||    
T  21876144 gt 21876145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 6183458 - 6183357
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| ||   ||||||||||||||||||||| | |||||| |||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  6183458 ctgatgtaaaaactaacagtgtgtatctttcccttcaggtatttttcgtgctgatgtgaaaactaaaacagctttgatgttaaatgtatattttgtagta 6183359  T
Q  100 gt 101  Q
    ||    
T  6183358 gt 6183357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 9809558 - 9809634
Alignment:
Q  25 atctttcccttcagattttttc-ctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtag 100  Q
    ||||||||| |||||| ||||| |||| ||||||||||| |||| ||||||| ||| ||||||||||||| ||||||    
T  9809558 atctttcccatcagatattttctctgccgatgtgaaaaccaaaaaccccttgttgtcaaatgtatattttctagtag 9809634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 17736 - 17635
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17736 ctgatgtaaaaactcatagtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagta 17637  T
Q  100 gt 101  Q
    ||    
T  17636 gt 17635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31882 - 31781
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31882 ctgatgtaaaaactcatagtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagta 31783  T
Q  100 gt 101  Q
    ||    
T  31782 gt 31781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38079 - 37978
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38079 ctgatgtaaaaactcatagtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagta 37980  T
Q  100 gt 101  Q
    ||    
T  37979 gt 37978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16429023 - 16428922
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16429023 ctgatgtaaaaactcatagtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagta 16428924  T
Q  100 gt 101  Q
    ||    
T  16428923 gt 16428922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 29167191 - 29167146
Alignment:
Q  55 gtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 101  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  29167191 gtgaaaactaaa-cccccttgattttaaatgtatattttgtagtagt 29167146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 21527249 - 21527148
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21527249 ctgatgtaaaaactcatagtgtgtatctttccatttagatattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 21527150  T
Q  100 gt 101  Q
    ||    
T  21527149 gt 21527148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 4876403 - 4876302
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||| |||||||| |||| ||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4876403 ctgatgtaaaaactcacagtgtatatctttctcttctgatatttttcgtgctgatgtgaaaactaaaacccgcttgatgttaaatgtatattttgtagta 4876304  T
Q  100 gt 101  Q
    ||    
T  4876303 gt 4876302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8777598 - 8777497
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  |||||||||||||| |||||| | |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  8777598 ctgatgtaaaaactcacagtgtgtatctttctcttcagttattttccgtgctgatgtaaaaactaaaacccccttgatgttaaatctatattttgtagta 8777499  T
Q  100 gt 101  Q
    ||    
T  8777498 gt 8777497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31189145 - 31189044
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcctg-ctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||  ||||||||||||||||| | ||||||   |||||||||||| ||||| | || ||||||||||| |||||||| |||||    
T  31189145 ctgatgtaaaaactcacagcatgtatctttcccttcaggtattttccgcactgatgtgaaaattaaaaacaccctgatgttaaatttatattttctagta 31189046  T
Q  100 gt 101  Q
    ||    
T  31189045 gt 31189044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 26133799 - 26133747
Alignment:
Q  41 tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatatttt 93  Q
    |||||| |||||||||||||||| ||| |||| |||||| |||| ||||||||    
T  26133799 tttttcatgctgatgtgaaaactgaaaaccccctgatgtcaaatatatatttt 26133747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 84436 - 84335
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  84436 ctgatgtaaaaactcatagtgtgtatctttcccttcagatattttccgtgctgatgtgaaaactaaaacccctatgatgttaaatgtatattttatagta 84337  T
Q  100 gt 101  Q
    ||    
T  84336 gt 84335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 593 - 694
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| ||   ||||||||||||||||||||| | |||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  593 ctgatgtaaaaactaacagtgtgtatctttcccttcaggtatttttcgtgctgatgtgaaaactaaaacacctttgatgttaaatgtatattttgtagta 692  T
Q  100 gt 101  Q
    ||    
T  693 gt 694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12464714 - 12464815
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  | |||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12464714 ctgatgtaaaaactcacactgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagta 12464813  T
Q  100 gt 101  Q
    ||    
T  12464814 gt 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 39291580 - 39291481
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  ||||||||||||| ||||||||  |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  39291580 ctgatgtaaaaactcacagtgtgtatcttttccttcagaaatttttcgtgctgatgtgaaaactgaaacccccgtgatgttaaatgtatattttgtagta 39291481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 7424165 - 7424261
Alignment:
Q  4 atgtaaaagctctaagtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    |||||||| |||  ||||||||||||| | ||||||| |||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  7424165 atgtaaaaactcacagtgtgtatcttttctttcagatatttttcgtgctgatgtgaaaactaaaaccctcgtgatgttagatgtatattttgtagta 7424261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 9010614 - 9010695
Alignment:
Q  21 gtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 101  Q
    ||||||||||||||||| || |||||| || ||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  9010614 gtgtatctttcccttcaaatatttttcgtgttgatgtgaaaactaaaacatccttaatgttaaatgtatattttgtagtagt 9010695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 31132291 - 31132390
Alignment:
Q  1 ctgatgtaaaagctctaagtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 99  Q
    ||||||||||| |||  | ||||||||||||||||||||| |||||| ||| |||||||||| |||| ||||  ||||||||||| ||||||||||||||    
T  31132291 ctgatgtaaaatctcacactgtgtatctttcccttcagatattttccgtgccgatgtgaaaaataaaccccctctgatgttaaatatatattttgtagta 31132390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University