View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9813_low_12 (Length: 238)
Name: NF9813_low_12
Description: NF9813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9813_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 53870220 - 53869997
Alignment:
| Q |
1 |
ttcacgtttttgcaattacactttgataacatttataattgagttcatacgaaatttatggttgaaatagaaattgggttgcaannnnnnnctttaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
53870220 |
ttcacgtttttgcaattacactttgataacatttataactgagttcatatgaaatttatggttgaagtagaaattgggttgcaaattttttctttaaaca |
53870121 |
T |
|
| Q |
101 |
aattttcatcttagtctatgacataatnnnnnnnnnnnnncatcttagaagacccatacaagttacagctaaaactagaaaacatggaattgtatttggt |
200 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53870120 |
aattttcatcttagtctatgacataataaaaattaaaaaacatcttagaagacccatagaagttacagctaaaactagaaaacatggaattgtatttggt |
53870021 |
T |
|
| Q |
201 |
aaaaaacacttgctgaggagttgg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
53870020 |
aaaaaacacttgctgaggagttgg |
53869997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 624919 - 625142
Alignment:
| Q |
1 |
ttcacgtttttgcaattacactttgataacatttataattgagttcatacgaaatttatggttgaaatagaaattgggttgcaannnnnnnctttaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
624919 |
ttcacgtttttgcaattacactttgataacatttataactgagttcatacgaaatttatggttgaagtagaaattgggttgcaaattttttttttaaaca |
625018 |
T |
|
| Q |
101 |
aattttcatcttagtctatgacataatnnnnnnnnnnnnncatcttagaagacccatacaagttacagctaaaactagaaaacatggaattgtatttggt |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
625019 |
aattttcatcttagtctatgacataataaaaattaaaaaacatcttagaagacccatacaagttacaactaaaactagaaaacatggaattgtatttggt |
625118 |
T |
|
| Q |
201 |
aaaaaacacttgctgaggagttgg |
224 |
Q |
| |
|
|||| ||||||||||||||||||| |
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|
| T |
625119 |
aaaatacacttgctgaggagttgg |
625142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5277995 - 5277772
Alignment:
| Q |
1 |
ttcacgtttttgcaattacactttgataacatttataattgagttcatacgaaatttatggttgaaatagaaattgggttgcaannnnnnnctttaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
5277995 |
ttcacgtttttgcaattacactttgataacatttataactgagttcataagaaatttatggttgaagtagaaattgggttgcaaattttttctttaaaca |
5277896 |
T |
|
| Q |
101 |
aattttcatcttagtctatgacataatnnnnnnnnnnnnncatcttagaagacccatacaagttacagctaaaactagaaaacatggaattgtatttggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5277895 |
aattttcatcttagtctatgacataataaaaattaaaaaacatcttagaagacccataaaagttacagctaaaactagaaaacatggaattgtatttggt |
5277796 |
T |
|
| Q |
201 |
aaaaaacacttgctgaggagttgg |
224 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
5277795 |
aaaaaacacttgctgaggaattgg |
5277772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40727530 - 40727315
Alignment:
| Q |
1 |
ttcacgtttttgcaattacactttgataacatttataattgagttcatacgaaatttatggttgaaatagaaattgggttgcaannnnnnnctttaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |
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|
| T |
40727530 |
ttcacgtttttgcaattacactttgataacatttataactgagttcatacgaaatttatggttgaagtagaaattgggttgcaaattttttctttgaaca |
40727431 |
T |
|
| Q |
101 |
aattttcatcttagtctatgacataatnnnnnnnnnnnnncatcttagaagacccatacaagttacagctaaaactagaaaacatggaattgtatttggt |
200 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
40727430 |
aattttcatc--------tgacataataaaaattaaaaaacatcttagaagacccatacaagttacagctaaaactagaaaatatgaaattgtatttggt |
40727339 |
T |
|
| Q |
201 |
aaaaaacacttgctgaggagttgg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40727338 |
aaaaaacacttgctgaggagttgg |
40727315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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