View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9813_low_13 (Length: 225)
Name: NF9813_low_13
Description: NF9813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9813_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 5370525 - 5370636
Alignment:
| Q |
106 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt |
205 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5370525 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt |
5370624 |
T |
|
| Q |
206 |
ctcattcttctc |
217 |
Q |
| |
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|||||||||||| |
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| T |
5370625 |
ctcattcttctc |
5370636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 4561725 - 4561614
Alignment:
| Q |
106 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4561725 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt |
4561626 |
T |
|
| Q |
206 |
ctcattcttctc |
217 |
Q |
| |
|
|||||||||||| |
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| T |
4561625 |
ctcattcttctc |
4561614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 14953395 - 14953506
Alignment:
| Q |
106 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14953395 |
cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt |
14953494 |
T |
|
| Q |
206 |
ctcattcttctc |
217 |
Q |
| |
|
|||||||||||| |
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|
| T |
14953495 |
ctcattcttctc |
14953506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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