View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9813_low_2 (Length: 555)
Name: NF9813_low_2
Description: NF9813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9813_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 290 - 542
Target Start/End: Complemental strand, 7426288 - 7426027
Alignment:
| Q |
290 |
tttcaatcactctaacatcattgaaagtaattctattgaaatcatcgtaggactcaaaaatgaagattt---aatcctttcaactctactagtacattcc |
386 |
Q |
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| T |
7426288 |
tttcaatcattctaacttcattgaaagtaattctattgaaatcatcgtaggactcaaaaatgaagattttttaatcctttcaactctactagtacattcc |
7426189 |
T |
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| Q |
387 |
ttcnnnnnnn---ctctactatgtcccctatcatatttcaccagtagatagtagatacttctaatcgtcaatcgtggtaatgtgtgatttagtgat---t |
480 |
Q |
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| T |
7426188 |
ttcaaaaaaaaaactctactatgtcccctatcatatttcaccagtagatagtagatacttctaatcgtcactcgcggtaatgtgtgatttagtgattctt |
7426089 |
T |
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| Q |
481 |
cttactcacagttttattccattattcttgaaaagttagaaacaaattaattgataatgatg |
542 |
Q |
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| T |
7426088 |
cttactcacagttttattccattattcttgaaaagttaaaaacaaataaattgataatgatg |
7426027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 7426560 - 7426467
Alignment:
| Q |
31 |
ttgtacaaaagttgcttctgttttggatgtgtttttgtttgtgtatagatttcccaacacatgtaagagtttattcaaaattcatagcgtcaaa |
124 |
Q |
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| T |
7426560 |
ttgtacaaaagttgcttctgttttggatgtgtttttgtttgtgtatagatttcccaacacatgtaagagtttattcaaaattcatagcgtcaaa |
7426467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 7426430 - 7426328
Alignment:
| Q |
148 |
agaggacgtagaacctacttaataagaataaaactatacaattaactcttcaaaaagaattacttttttaacatgtgtccttgataacactagttagcat |
247 |
Q |
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| T |
7426430 |
agaggacgtagaacctacttaataagaataaaactatacaattaactcttcaaaaagaattacttccttaacatgtgtccttgataacaatagttagtat |
7426331 |
T |
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| Q |
248 |
ctt |
250 |
Q |
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| T |
7426330 |
ctt |
7426328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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