View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9813_low_5 (Length: 315)

Name: NF9813_low_5
Description: NF9813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9813_low_5
NF9813_low_5
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-38)||(136916-136953)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-38)||(330197-330234)
[»] chr8 (30 HSPs)
chr8 (1-38)||(2968178-2968215)
chr8 (1-38)||(14577174-14577211)
chr8 (1-38)||(17876078-17876115)
chr8 (1-38)||(27912406-27912443)
chr8 (1-38)||(27958825-27958862)
chr8 (1-38)||(30904668-30904705)
chr8 (1-38)||(35482702-35482739)
chr8 (1-38)||(35483010-35483047)
chr8 (1-35)||(17875771-17875805)
chr8 (1-38)||(10682061-10682098)
chr8 (1-34)||(10682369-10682402)
chr8 (1-38)||(20178371-20178408)
chr8 (1-38)||(20223099-20223136)
chr8 (1-38)||(21661004-21661041)
chr8 (1-38)||(30904361-30904398)
chr8 (1-38)||(30928621-30928658)
chr8 (1-37)||(42123703-42123739)
chr8 (1-36)||(17844189-17844224)
chr8 (1-36)||(30928315-30928350)
chr8 (1-38)||(2967870-2967907)
chr8 (1-38)||(3691582-3691619)
chr8 (1-38)||(10925379-10925416)
chr8 (1-38)||(13327262-13327299)
chr8 (1-38)||(20223415-20223452)
chr8 (1-38)||(23792888-23792925)
chr8 (1-38)||(27912095-27912132)
chr8 (1-38)||(27958514-27958551)
chr8 (1-38)||(28828493-28828530)
chr8 (1-38)||(30253903-30253940)
chr8 (1-38)||(44379522-44379559)
[»] chr7 (23 HSPs)
chr7 (1-38)||(7417820-7417857)
chr7 (1-38)||(19305740-19305777)
chr7 (1-38)||(28408549-28408586)
chr7 (1-38)||(49114171-49114208)
chr7 (2-38)||(8437305-8437341)
chr7 (1-36)||(32523511-32523546)
chr7 (1-35)||(2933289-2933323)
chr7 (1-35)||(32178163-32178197)
chr7 (1-38)||(1511190-1511227)
chr7 (1-38)||(7417511-7417548)
chr7 (1-38)||(8437614-8437651)
chr7 (1-38)||(10878625-10878662)
chr7 (1-38)||(31894563-31894600)
chr7 (1-38)||(32177855-32177892)
chr7 (1-38)||(44307611-44307648)
chr7 (1-38)||(49113862-49113899)
chr7 (1-36)||(28408244-28408279)
chr7 (1-36)||(37453375-37453410)
chr7 (1-35)||(32832542-32832576)
chr7 (9-38)||(1511503-1511532)
chr7 (1-38)||(19306052-19306089)
chr7 (1-38)||(31894258-31894295)
chr7 (1-38)||(44307927-44307964)
[»] chr6 (13 HSPs)
chr6 (1-38)||(3218449-3218486)
chr6 (1-38)||(3922539-3922576)
chr6 (1-38)||(3922847-3922884)
chr6 (1-38)||(4243231-4243268)
chr6 (1-38)||(6755225-6755262)
chr6 (1-38)||(14763616-14763653)
chr6 (1-38)||(23068696-23068733)
chr6 (1-38)||(33595628-33595665)
chr6 (1-37)||(3218152-3218188)
chr6 (1-37)||(33595320-33595356)
chr6 (1-38)||(23069004-23069041)
chr6 (1-38)||(4242923-4242960)
chr6 (1-37)||(14763319-14763355)
[»] chr5 (28 HSPs)
chr5 (1-38)||(2094881-2094918)
chr5 (1-38)||(18485659-18485696)
chr5 (1-38)||(20769712-20769749)
chr5 (1-38)||(30370511-30370548)
chr5 (1-38)||(30370819-30370856)
chr5 (1-38)||(32936514-32936551)
chr5 (1-38)||(35362984-35363021)
chr5 (1-38)||(35363298-35363335)
chr5 (1-38)||(37093752-37093789)
chr5 (1-38)||(40833936-40833973)
chr5 (1-38)||(40834244-40834281)
chr5 (263-311)||(17646936-17646984)
chr5 (1-38)||(2094575-2094612)
chr5 (1-38)||(7145533-7145570)
chr5 (1-38)||(15179098-15179135)
chr5 (1-38)||(19558181-19558218)
chr5 (1-38)||(20339156-20339193)
chr5 (1-38)||(32458095-32458132)
chr5 (1-38)||(32936206-32936243)
chr5 (1-38)||(32994463-32994500)
chr5 (1-38)||(35362226-35362263)
chr5 (52-87)||(17647163-17647198)
chr5 (1-36)||(20770021-20770056)
chr5 (1-38)||(7145847-7145884)
chr5 (1-38)||(13600444-13600481)
chr5 (5-38)||(13600758-13600791)
chr5 (1-38)||(18485968-18486005)
chr5 (1-38)||(27843023-27843060)
[»] chr4 (44 HSPs)
chr4 (1-38)||(9525805-9525842)
chr4 (1-38)||(13294911-13294948)
chr4 (1-38)||(20930975-20931012)
chr4 (1-38)||(21053604-21053641)
chr4 (1-38)||(23163281-23163318)
chr4 (1-38)||(23163588-23163625)
chr4 (1-38)||(26202522-26202559)
chr4 (1-38)||(28458830-28458867)
chr4 (1-38)||(33369509-33369546)
chr4 (1-38)||(33692262-33692299)
chr4 (1-38)||(37872767-37872804)
chr4 (1-38)||(41689389-41689426)
chr4 (1-38)||(49621439-49621476)
chr4 (1-38)||(49621746-49621783)
chr4 (1-38)||(55742621-55742658)
chr4 (1-36)||(50161425-50161460)
chr4 (1-35)||(50161118-50161152)
chr4 (1-38)||(2685985-2686022)
chr4 (1-38)||(9526117-9526154)
chr4 (1-38)||(21707911-21707948)
chr4 (1-38)||(25297680-25297717)
chr4 (1-38)||(30055208-30055245)
chr4 (1-38)||(30055512-30055549)
chr4 (1-38)||(33692570-33692607)
chr4 (1-38)||(42856804-42856841)
chr4 (1-38)||(42857110-42857147)
chr4 (1-38)||(46143579-46143616)
chr4 (1-38)||(48419525-48419562)
chr4 (1-38)||(52690096-52690133)
chr4 (1-38)||(52690406-52690443)
chr4 (1-38)||(55742916-55742953)
chr4 (1-37)||(30799632-30799668)
chr4 (1-37)||(46143273-46143309)
chr4 (1-36)||(3546490-3546525)
chr4 (1-36)||(28458523-28458558)
chr4 (1-35)||(30799295-30799329)
chr4 (1-38)||(3546799-3546836)
chr4 (1-38)||(20931286-20931323)
chr4 (2-35)||(25297990-25298023)
chr4 (1-38)||(32488584-32488621)
chr4 (2-35)||(41689701-41689734)
chr4 (1-38)||(55140198-55140235)
chr4 (2-38)||(13294602-13294638)
chr4 (2-38)||(37873072-37873108)
[»] chr3 (29 HSPs)
chr3 (1-38)||(8851804-8851841)
chr3 (1-38)||(22316720-22316757)
chr3 (1-38)||(22975345-22975382)
chr3 (1-38)||(28830061-28830098)
chr3 (1-38)||(37513399-37513436)
chr3 (1-38)||(49621287-49621324)
chr3 (1-38)||(49711401-49711438)
chr3 (1-37)||(48434111-48434147)
chr3 (1-36)||(11121591-11121626)
chr3 (1-36)||(22975653-22975688)
chr3 (1-35)||(36229766-36229800)
chr3 (2-36)||(55009408-55009442)
chr3 (1-38)||(9296383-9296420)
chr3 (1-38)||(22317028-22317065)
chr3 (1-38)||(23043498-23043535)
chr3 (1-38)||(25847753-25847790)
chr3 (1-38)||(33491713-33491750)
chr3 (1-38)||(37513091-37513128)
chr3 (1-37)||(49711707-49711743)
chr3 (1-35)||(3612598-3612632)
chr3 (1-35)||(36230072-36230106)
chr3 (1-35)||(48433801-48433835)
chr3 (1-38)||(8852114-8852151)
chr3 (1-38)||(11121283-11121320)
chr3 (1-38)||(25847445-25847482)
chr3 (1-38)||(28829753-28829790)
chr3 (1-38)||(33491602-33491639)
chr3 (1-38)||(41944153-41944190)
chr3 (1-38)||(44506352-44506389)
[»] chr2 (25 HSPs)
chr2 (1-38)||(601641-601678)
chr2 (1-38)||(2318798-2318835)
chr2 (1-38)||(9320111-9320148)
chr2 (1-38)||(10044745-10044782)
chr2 (1-38)||(10108813-10108850)
chr2 (1-38)||(17846008-17846045)
chr2 (1-38)||(18916625-18916662)
chr2 (1-38)||(27360119-27360156)
chr2 (1-38)||(27360430-27360467)
chr2 (1-35)||(44536493-44536527)
chr2 (1-38)||(4261464-4261501)
chr2 (1-38)||(17846316-17846353)
chr2 (1-38)||(18916933-18916970)
chr2 (1-38)||(20363970-20364007)
chr2 (1-38)||(20364279-20364316)
chr2 (1-37)||(5547103-5547139)
chr2 (1-36)||(9319804-9319839)
chr2 (1-35)||(4261156-4261190)
chr2 (1-35)||(5547359-5547393)
chr2 (1-38)||(981781-981818)
chr2 (1-38)||(2318493-2318530)
chr2 (1-38)||(18178397-18178434)
chr2 (1-38)||(30337424-30337461)
chr2 (1-38)||(30337737-30337774)
chr2 (1-37)||(10109124-10109160)
[»] chr1 (23 HSPs)
chr1 (1-38)||(2026721-2026758)
chr1 (1-38)||(7113865-7113902)
chr1 (1-38)||(12139333-12139370)
chr1 (1-38)||(40902327-40902364)
chr1 (2-38)||(2027029-2027065)
chr1 (2-38)||(17611425-17611461)
chr1 (1-36)||(25779887-25779922)
chr1 (1-35)||(25780197-25780231)
chr1 (1-38)||(1549327-1549364)
chr1 (1-38)||(7114171-7114208)
chr1 (1-38)||(12115260-12115297)
chr1 (1-38)||(17611733-17611770)
chr1 (2-35)||(30002214-30002247)
chr1 (1-38)||(30562784-30562821)
chr1 (1-38)||(30563092-30563129)
chr1 (1-36)||(30002517-30002552)
chr1 (1-35)||(17985290-17985324)
chr1 (1-38)||(4969673-4969710)
chr1 (1-38)||(12139024-12139061)
chr1 (1-38)||(17985596-17985633)
chr1 (1-38)||(19897176-19897213)
chr1 (1-38)||(40290090-40290127)
chr1 (2-38)||(34480462-34480498)
[»] scaffold0347 (2 HSPs)
scaffold0347 (1-38)||(11940-11977)
scaffold0347 (1-38)||(12242-12279)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-38)||(12905-12942)


Alignment Details
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 136953 - 136916
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  136953 ctaaaataaagttaagggactaattgtgtaattttgcc 136916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 330234 - 330197
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  330234 ctaaaataaagttaagggactaattgtgtaattttgcc 330197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2968178 - 2968215
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2968178 ctaaaataaagttaagggactaattgtgtaattttgcc 2968215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14577174 - 14577211
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14577174 ctaaaataaagttaagggactaattgtgtaattttgcc 14577211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17876078 - 17876115
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17876078 ctaaaataaagttaagggactaattgtgtaattttgcc 17876115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27912406 - 27912443
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27912406 ctaaaataaagttaagggactaattgtgtaattttgcc 27912443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27958825 - 27958862
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27958825 ctaaaataaagttaagggactaattgtgtaattttgcc 27958862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30904668 - 30904705
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30904668 ctaaaataaagttaagggactaattgtgtaattttgcc 30904705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35482739 - 35482702
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35482739 ctaaaataaagttaagggactaattgtgtaattttgcc 35482702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35483010 - 35483047
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35483010 ctaaaataaagttaagggactaattgtgtaattttgcc 35483047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17875805 - 17875771
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17875805 ctaaaataaagttaagggactaattgtgtaatttt 17875771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10682098 - 10682061
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10682098 ctaaaataaagttaagggattaattgtgtaattttgcc 10682061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10682369 - 10682402
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10682369 ctaaaataaagttaagggactaattgtgtaattt 10682402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20178408 - 20178371
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  20178408 ctaaaattaagttaagggactaattgtgtaattttgcc 20178371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20223136 - 20223099
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  20223136 ctaaaattaagttaagggactaattgtgtaattttgcc 20223099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21661004 - 21661041
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  21661004 ctaaaataaagttaagggactaaatgtgtaattttgcc 21661041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30904398 - 30904361
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  30904398 ctaaaataaagttaagggattaattgtgtaattttgcc 30904361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30928621 - 30928658
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  30928621 ctaaaattaagttaagggactaattgtgtaattttgcc 30928658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42123739 - 42123703
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    ||||||| |||||||||||||||||||||||||||||    
T  42123739 ctaaaattaagttaagggactaattgtgtaattttgc 42123703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17844189 - 17844224
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  17844189 ctaaaattaagttaagggactaattgtgtaattttg 17844224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30928350 - 30928315
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30928350 ctaaaattaagttaagggactaattgtgtaattttg 30928315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2967907 - 2967870
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  2967907 ctaaaataaagttaagggactaattgtgctattttgcc 2967870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3691619 - 3691582
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  3691619 ctaaaattatgttaagggactaattgtgtaattttgcc 3691582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10925379 - 10925416
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  10925379 ctaaaataaagttaagggactaaaagtgtaattttgcc 10925416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13327299 - 13327262
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  13327299 ctaaaattaagttaaggaactaattgtgtaattttgcc 13327262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20223415 - 20223452
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  20223415 ctaaaattaagttaagggattaattgtgtaattttgcc 20223452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23792888 - 23792925
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  23792888 ctaaaattaagttaagggactaattgtgttattttgcc 23792925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27912132 - 27912095
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  27912132 ctaaaataaagttaagggactaattgtgctattttgcc 27912095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27958551 - 27958514
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  27958551 ctaaaataaagttaagggactaattgtgctattttgcc 27958514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28828493 - 28828530
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  28828493 ctaaaataaagttaagggactaaaagtgtaattttgcc 28828530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30253903 - 30253940
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  30253903 ctaaaataaagttaagggactaaaagtgtaattttgcc 30253940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44379559 - 44379522
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  44379559 ctaaaattaagttaagggattaattgtgtaattttgcc 44379522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7417820 - 7417857
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7417820 ctaaaataaagttaagggactaattgtgtaattttgcc 7417857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19305777 - 19305740
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19305777 ctaaaataaagttaagggactaattgtgtaattttgcc 19305740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28408549 - 28408586
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28408549 ctaaaataaagttaagggactaattgtgtaattttgcc 28408586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49114171 - 49114208
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49114171 ctaaaataaagttaagggactaattgtgtaattttgcc 49114208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 8437341 - 8437305
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  8437341 taaaataaagttaagggactaattgtgtaattttgcc 8437305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32523511 - 32523546
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  32523511 ctaaaataaagttaagggactaattgtgtaattttg 32523546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2933323 - 2933289
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2933323 ctaaaataaagttaagggactaattgtgtaatttt 2933289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32178163 - 32178197
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32178163 ctaaaataaagttaagggactaattgtgtaatttt 32178197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1511227 - 1511190
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  1511227 ctaaaattaagttaagggactaattgtgtaattttgcc 1511190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7417548 - 7417511
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  7417548 ctaaaataaagttaagggattaattgtgtaattttgcc 7417511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8437614 - 8437651
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  8437614 ctaaaataaagttaagggactaattatgtaattttgcc 8437651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10878662 - 10878625
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  10878662 ctaaaattaagttaagggactaattgtgtaattttgcc 10878625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31894563 - 31894600
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  31894563 ctaaaattaagttaagggactaattgtgtaattttgcc 31894600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32177892 - 32177855
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  32177892 ctaaaataaagttaaaggactaattgtgtaattttgcc 32177855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44307648 - 44307611
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44307648 ctaaaattaagttaagggactaattgtgtaattttgcc 44307611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49113899 - 49113862
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  49113899 ctaaaataaagttaaaggactaattgtgtaattttgcc 49113862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28408279 - 28408244
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  28408279 ctaaaataaagttaaggggctaattgtgtaattttg 28408244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37453375 - 37453410
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37453375 ctaaaataaagttaagggactgattgtgtaattttg 37453410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32832542 - 32832576
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  32832542 ctaaaataaaattaagggactaattgtgtaatttt 32832576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 1511503 - 1511532
Alignment:
Q  9 aagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||    
T  1511503 aagttaagggactaattgtgtaattttgcc 1511532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19306052 - 19306089
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  19306052 ctaaaataaagttaagggactaattgtgctattttgcc 19306089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31894295 - 31894258
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  31894295 ctaaaattaagttaagggactatttgtgtaattttgcc 31894258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44307927 - 44307964
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  44307927 ctaaaattaagttaagggattaattgtgtaattttgcc 44307964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3218449 - 3218486
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3218449 ctaaaataaagttaagggactaattgtgtaattttgcc 3218486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3922576 - 3922539
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3922576 ctaaaataaagttaagggactaattgtgtaattttgcc 3922539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3922847 - 3922884
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3922847 ctaaaataaagttaagggactaattgtgtaattttgcc 3922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4243231 - 4243268
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4243231 ctaaaataaagttaagggactaattgtgtaattttgcc 4243268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6755225 - 6755262
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6755225 ctaaaataaagttaagggactaattgtgtaattttgcc 6755262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14763616 - 14763653
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14763616 ctaaaataaagttaagggactaattgtgtaattttgcc 14763653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23068733 - 23068696
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23068733 ctaaaataaagttaagggactaattgtgtaattttgcc 23068696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33595628 - 33595665
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33595628 ctaaaataaagttaagggactaattgtgtaattttgcc 33595665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3218188 - 3218152
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  3218188 ctaaaataaagttaagggactaattgtgtaattttgc 3218152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33595356 - 33595320
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  33595356 ctaaaataaagttaagggactaattgtgtaattttgc 33595320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23069004 - 23069041
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  23069004 ctaaaataaagttaagagactaattgtgtaattttgcc 23069041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4242960 - 4242923
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  4242960 ctaaaataaaattaaaggactaattgtgtaattttgcc 4242923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14763355 - 14763319
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  14763355 ctaaaataaagttaagggactgattgtataattttgc 14763319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2094881 - 2094918
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2094881 ctaaaataaagttaagggactaattgtgtaattttgcc 2094918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18485696 - 18485659
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18485696 ctaaaataaagttaagggactaattgtgtaattttgcc 18485659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20769749 - 20769712
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20769749 ctaaaataaagttaagggactaattgtgtaattttgcc 20769712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30370548 - 30370511
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30370548 ctaaaataaagttaagggactaattgtgtaattttgcc 30370511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30370819 - 30370856
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30370819 ctaaaataaagttaagggactaattgtgtaattttgcc 30370856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32936514 - 32936551
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32936514 ctaaaataaagttaagggactaattgtgtaattttgcc 32936551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35363021 - 35362984
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35363021 ctaaaataaagttaagggactaattgtgtaattttgcc 35362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35363298 - 35363335
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35363298 ctaaaataaagttaagggactaattgtgtaattttgcc 35363335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37093752 - 37093789
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37093752 ctaaaataaagttaagggactaattgtgtaattttgcc 37093789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40833973 - 40833936
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40833973 ctaaaataaagttaagggactaattgtgtaattttgcc 40833936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40834244 - 40834281
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40834244 ctaaaataaagttaagggactaattgtgtaattttgcc 40834281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 17646984 - 17646936
Alignment:
Q  263 tagacaaaggcaccttcggaccacccctatcaccggacctttgctactc 311  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  17646984 tagacacaggcatcttcggaccacccctatcaccggaccttcgctactc 17646936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2094612 - 2094575
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  2094612 ctaaaataaagttaagggattaattgtgtaattttgcc 2094575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7145570 - 7145533
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  7145570 ctaaaataaagttaagggactaattgtgttattttgcc 7145533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15179098 - 15179135
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  15179098 ctaaaattaagttaagggactaattgtgtaattttgcc 15179135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19558181 - 19558218
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19558181 ctaaaattaagttaagggactaattgtgtaattttgcc 19558218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20339193 - 20339156
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20339193 ctaaaataaagttaagggattaattgtgtaattttgcc 20339156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32458095 - 32458132
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  32458095 ctaaaattaagttaagggactaattgtgtaattttgcc 32458132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32936243 - 32936206
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  32936243 ctaaaataaagttaagtgactaattgtgtaattttgcc 32936206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32994463 - 32994500
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  32994463 ctaaaattaagttaagggactaattgtgtaattttgcc 32994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35362226 - 35362263
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  35362226 ctaaaattaagttaagggactaattgtgtaattttgcc 35362263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 17647198 - 17647163
Alignment:
Q  52 gatcaacaaaagctgtgttgaattgtttaatcagat 87  Q
    |||||||||||| |||||||||||||||||||||||    
T  17647198 gatcaacaaaagttgtgttgaattgtttaatcagat 17647163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20770021 - 20770056
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  20770021 ctaaaataatgttaagggactaattgtgtaattttg 20770056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7145847 - 7145884
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  7145847 ctaaaataaagttaagggattaattatgtaattttgcc 7145884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13600481 - 13600444
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  13600481 ctaaaataaaggtaaaggactaattgtgtaattttgcc 13600444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 13600758 - 13600791
Alignment:
Q  5 aataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||| |||||||||||||||||||||    
T  13600758 aataaagttaagagactaattgtgtaattttgcc 13600791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18485968 - 18486005
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  18485968 ctaaaataaagttaagggactaattgtgctattttgcc 18486005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27843060 - 27843023
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  27843060 ctaaaattaagttaagggactaattatgtaattttgcc 27843023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9525842 - 9525805
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9525842 ctaaaataaagttaagggactaattgtgtaattttgcc 9525805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13294911 - 13294948
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13294911 ctaaaataaagttaagggactaattgtgtaattttgcc 13294948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20931012 - 20930975
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20931012 ctaaaataaagttaagggactaattgtgtaattttgcc 20930975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21053604 - 21053641
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21053604 ctaaaataaagttaagggactaattgtgtaattttgcc 21053641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23163318 - 23163281
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23163318 ctaaaataaagttaagggactaattgtgtaattttgcc 23163281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23163588 - 23163625
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23163588 ctaaaataaagttaagggactaattgtgtaattttgcc 23163625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26202559 - 26202522
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26202559 ctaaaataaagttaagggactaattgtgtaattttgcc 26202522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28458830 - 28458867
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28458830 ctaaaataaagttaagggactaattgtgtaattttgcc 28458867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33369546 - 33369509
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33369546 ctaaaataaagttaagggactaattgtgtaattttgcc 33369509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33692299 - 33692262
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33692299 ctaaaataaagttaagggactaattgtgtaattttgcc 33692262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37872804 - 37872767
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37872804 ctaaaataaagttaagggactaattgtgtaattttgcc 37872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41689426 - 41689389
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41689426 ctaaaataaagttaagggactaattgtgtaattttgcc 41689389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49621476 - 49621439
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49621476 ctaaaataaagttaagggactaattgtgtaattttgcc 49621439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49621746 - 49621783
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49621746 ctaaaataaagttaagggactaattgtgtaattttgcc 49621783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55742658 - 55742621
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55742658 ctaaaataaagttaagggactaattgtgtaattttgcc 55742621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 50161425 - 50161460
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  50161425 ctaaaataaagttaagggactaattgtgtaattttg 50161460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 50161152 - 50161118
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  50161152 ctaaaataaagttaagggactaattgtgtaatttt 50161118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2686022 - 2685985
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2686022 ctaaaattaagttaagggactaattgtgtaattttgcc 2685985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9526117 - 9526154
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  9526117 ctaaaataaagttaagggactaattgtgttattttgcc 9526154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21707911 - 21707948
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  21707911 ctaaaataaagttaagagactaattgtgtaattttgcc 21707948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25297717 - 25297680
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  25297717 ctaaaattaagttaagggactaattgtgtaattttgcc 25297680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30055245 - 30055208
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  30055245 ctaaaattaagttaagggactaattgtgtaattttgcc 30055208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30055512 - 30055549
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  30055512 ctaaaattaagttaagggactaattgtgtaattttgcc 30055549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33692570 - 33692607
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33692570 ctaaaataaaattaagggactaattgtgtaattttgcc 33692607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42856841 - 42856804
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  42856841 ctaaaataaaattaagggactaattgtgtaattttgcc 42856804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42857110 - 42857147
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  42857110 ctaaaataaaattaagggactaattgtgtaattttgcc 42857147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46143579 - 46143616
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  46143579 ctaaaataaagttaaggcactaattgtgtaattttgcc 46143616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48419525 - 48419562
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  48419525 ctaaaataaagttaagggactaattgtgttattttgcc 48419562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52690133 - 52690096
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  52690133 ctaaaataaagttaagcgactaattgtgtaattttgcc 52690096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52690406 - 52690443
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  52690406 ctaaaataaagttaagagactaattgtgtaattttgcc 52690443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 55742916 - 55742953
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  55742916 ctaaaataaagttaaaggactaattgtgtaattttgcc 55742953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30799632 - 30799668
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    ||||||| |||||||||||||||||||||||||||||    
T  30799632 ctaaaattaagttaagggactaattgtgtaattttgc 30799668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46143309 - 46143273
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  46143309 ctaaaataaaattaagggactaattgtgtaattttgc 46143273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3546525 - 3546490
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3546525 ctaaaataaagttaagggactaattatgtaattttg 3546490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28458558 - 28458523
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  28458558 ctaaaataatgttaagggactaattgtgtaattttg 28458523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30799329 - 30799295
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  30799329 ctaaaattaagttaagggactaattgtgtaatttt 30799295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3546799 - 3546836
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  3546799 ctaaaataaagttaagaaactaattgtgtaattttgcc 3546836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20931286 - 20931323
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  20931286 ctaaaataaagttaaggaactaatcgtgtaattttgcc 20931323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 25297990 - 25298023
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||| |||||||||||||||||||||||||||    
T  25297990 taaaattaagttaagggactaattgtgtaatttt 25298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32488621 - 32488584
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  32488621 ctaaaataaagttaagggactaaaagtgtaattttgcc 32488584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 41689701 - 41689734
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaatttt 35  Q
    ||||||||||||||||| ||||||||||||||||    
T  41689701 taaaataaagttaaggggctaattgtgtaatttt 41689734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55140235 - 55140198
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  55140235 ctaaaataaagttaagggattaatcgtgtaattttgcc 55140198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 13294638 - 13294602
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||||||  ||||||||    
T  13294638 taaaataaagttaagggactaattgtgctattttgcc 13294602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 37873072 - 37873108
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||| | ||||||||||    
T  37873072 taaaataaagttaagggactaattatataattttgcc 37873108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8851841 - 8851804
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8851841 ctaaaataaagttaagggactaattgtgtaattttgcc 8851804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22316757 - 22316720
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22316757 ctaaaataaagttaagggactaattgtgtaattttgcc 22316720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22975382 - 22975345
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22975382 ctaaaataaagttaagggactaattgtgtaattttgcc 22975345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28830061 - 28830098
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28830061 ctaaaataaagttaagggactaattgtgtaattttgcc 28830098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37513399 - 37513436
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37513399 ctaaaataaagttaagggactaattgtgtaattttgcc 37513436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49621287 - 49621324
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49621287 ctaaaataaagttaagggactaattgtgtaattttgcc 49621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49711438 - 49711401
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49711438 ctaaaataaagttaagggactaattgtgtaattttgcc 49711401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48434111 - 48434147
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  48434111 ctaaaataaagttaagggactaattgtgtaattttgc 48434147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11121591 - 11121626
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  11121591 ctaaaataaagttaagggactaattgtgtaattttg 11121626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22975653 - 22975688
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22975653 ctaaaataaagttaagggactaattgtgtaattttg 22975688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36229800 - 36229766
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36229800 ctaaaataaagttaagggactaattgtgtaatttt 36229766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 55009408 - 55009442
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaattttg 36  Q
    |||||||||||||||||||||||||||||||||||    
T  55009408 taaaataaagttaagggactaattgtgtaattttg 55009442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9296420 - 9296383
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  9296420 ctaaaataaagttaagggactaattgtgtagttttgcc 9296383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22317028 - 22317065
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22317028 ctaaaataaagttaagggactaatcgtgtaattttgcc 22317065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23043498 - 23043535
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  23043498 ctaaaataaagttaaaggactaattgtgtaattttgcc 23043535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25847753 - 25847790
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  25847753 ctaaaataaaattaagggactaattgtgtaattttgcc 25847790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33491713 - 33491750
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  33491713 ctaaaataaagttaagagactaattgtgtaattttgcc 33491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37513128 - 37513091
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  37513128 ctaaaataaagttaagggactaattgtgttattttgcc 37513091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49711707 - 49711743
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  49711707 ctaaaataaagttaagggactaattatgtaattttgc 49711743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3612632 - 3612598
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  3612632 ctaaaattaagttaagggactaattgtgtaatttt 3612598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36230072 - 36230106
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  36230072 ctaaaataaagttaagggattaattgtgtaatttt 36230106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48433835 - 48433801
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  48433835 ctaaaataaagttaagggactaattgcgtaatttt 48433801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8852114 - 8852151
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  8852114 ctaaaataaagttaagggactaattgtgctattttgcc 8852151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11121320 - 11121283
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11121320 ctaaaataaagttaagggactaattgtgctattttgcc 11121283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25847482 - 25847445
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  25847482 ctaaaataaaattaagggactaattgtataattttgcc 25847445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28829790 - 28829753
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  28829790 ctaaaataaagttaaagaactaattgtgtaattttgcc 28829753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33491639 - 33491602
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  33491639 ctaaaataaagttaaggaactaattgtgtcattttgcc 33491602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41944153 - 41944190
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  41944153 ctaaaataaagttaagggactaaaagtgtaattttgcc 41944190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44506352 - 44506389
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  44506352 ctaaaattaagttaagggattaattgtgtaattttgcc 44506389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 601641 - 601678
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  601641 ctaaaataaagttaagggactaattgtgtaattttgcc 601678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2318798 - 2318835
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2318798 ctaaaataaagttaagggactaattgtgtaattttgcc 2318835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9320111 - 9320148
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9320111 ctaaaataaagttaagggactaattgtgtaattttgcc 9320148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10044782 - 10044745
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10044782 ctaaaataaagttaagggactaattgtgtaattttgcc 10044745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10108850 - 10108813
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10108850 ctaaaataaagttaagggactaattgtgtaattttgcc 10108813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17846045 - 17846008
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17846045 ctaaaataaagttaagggactaattgtgtaattttgcc 17846008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18916662 - 18916625
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18916662 ctaaaataaagttaagggactaattgtgtaattttgcc 18916625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27360156 - 27360119
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27360156 ctaaaataaagttaagggactaattgtgtaattttgcc 27360119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27360430 - 27360467
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27360430 ctaaaataaagttaagggactaattgtgtaattttgcc 27360467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44536493 - 44536527
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  44536493 ctaaaataaagttaagggactaattgtgtaatttt 44536527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4261464 - 4261501
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  4261464 ctaaaataaagttaacggactaattgtgtaattttgcc 4261501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17846316 - 17846353
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  17846316 ctaaaataaagttaagggactaattgtataattttgcc 17846353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18916933 - 18916970
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  18916933 ctaaaataaagttaagggactaattatgtaattttgcc 18916970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20364007 - 20363970
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20364007 ctaaaataaaattaagggactaattgtgtaattttgcc 20363970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20364279 - 20364316
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  20364279 ctaaaataaagttaaaggactaattgtgtaattttgcc 20364316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5547139 - 5547103
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    ||||||| |||||||||||||||||||||||||||||    
T  5547139 ctaaaattaagttaagggactaattgtgtaattttgc 5547103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9319839 - 9319804
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  9319839 ctaaaataaagttaagggactaattgtgtagttttg 9319804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4261190 - 4261156
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  4261190 ctaaaataaaattaagggactaattgtgtaatttt 4261156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5547359 - 5547393
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  5547359 ctaaaattaagttaagggactaattgtgtaatttt 5547393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 981818 - 981781
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  981818 ctaaaattaagttaagggacaaattgtgtaattttgcc 981781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2318530 - 2318493
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  2318530 ctaaaataaagttaagggactaattgtgctattttgcc 2318493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18178397 - 18178434
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  18178397 ctaatataaagttaaaggactaattgtgtaattttgcc 18178434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30337461 - 30337424
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  30337461 ctaaaattaagttaatggactaattgtgtaattttgcc 30337424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30337737 - 30337774
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  30337737 ctaaaattaagttaagggactaattctgtaattttgcc 30337774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10109124 - 10109160
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgc 37  Q
    ||||||||||||||||||||||| || ||||||||||    
T  10109124 ctaaaataaagttaagggactaagtgcgtaattttgc 10109160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2026758 - 2026721
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2026758 ctaaaataaagttaagggactaattgtgtaattttgcc 2026721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7113902 - 7113865
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7113902 ctaaaataaagttaagggactaattgtgtaattttgcc 7113865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12139333 - 12139370
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12139333 ctaaaataaagttaagggactaattgtgtaattttgcc 12139370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40902364 - 40902327
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40902364 ctaaaataaagttaagggactaattgtgtaattttgcc 40902327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 2027029 - 2027065
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  2027029 taaaataaagttaagggactaattgtgtaattttgcc 2027065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 17611461 - 17611425
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  17611461 taaaataaagttaagggactaattgtgtaattttgcc 17611425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25779922 - 25779887
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  25779922 ctaaaataaagttaagggactaattgtgtaattttg 25779887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25780197 - 25780231
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  25780197 ctaaaataaagttaagggactaattgtgtaatttt 25780231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1549364 - 1549327
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1549364 ctaaaataaagttaagggactaattgtgttattttgcc 1549327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7114171 - 7114208
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7114171 ctaaaataaagttaatggactaattgtgtaattttgcc 7114208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12115260 - 12115297
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12115260 ctaaaattaagttaagggactaattgtgtaattttgcc 12115297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17611733 - 17611770
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  17611733 ctaaaataaagttaagggactaattatgtaattttgcc 17611770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 30002247 - 30002214
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaatttt 35  Q
    ||||||||||||||||||||||||||||||||||    
T  30002247 taaaataaagttaagggactaattgtgtaatttt 30002214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30562821 - 30562784
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  30562821 ctaaaataaagttaagggactaattgtgttattttgcc 30562784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30563092 - 30563129
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  30563092 ctaaaataaagttaagggactaatcgtgtaattttgcc 30563129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30002517 - 30002552
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttg 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  30002517 ctaaaataaagttaagggactaattgtgttattttg 30002552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17985324 - 17985290
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaatttt 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  17985324 ctaaaataaagttaagagactaattgtgtaatttt 17985290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4969673 - 4969710
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  4969673 ctaaaattaagttaagtgactaattgtgtaattttgcc 4969710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12139061 - 12139024
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  12139061 ctaaaataaaattaagagactaattgtgtaattttgcc 12139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17985596 - 17985633
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  17985596 ctaaaataaagttaagggactaattgtgctattttgcc 17985633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19897213 - 19897176
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  19897213 ctaaaattaagttaagggactaattgtataattttgcc 19897176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40290090 - 40290127
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  40290090 ctaaaattaagttaagggactaattatgtaattttgcc 40290127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 34480462 - 34480498
Alignment:
Q  2 taaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||||||||||||||||||  |||||||||||||    
T  34480462 taaaataaagttaagggactaaaagtgtaattttgcc 34480498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11977 - 11940
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  11977 ctaaaattaagttaagggactaattgtgtaattttgcc 11940  T

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Target: scaffold0347; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12242 - 12279
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12242 ctaaaattaagttaagggactaattgtgtaattttgcc 12279  T

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Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12905 - 12942
Alignment:
Q  1 ctaaaataaagttaagggactaattgtgtaattttgcc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12905 ctaaaattaagttaagggactaattgtgtaattttgcc 12942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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