View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9813_low_6 (Length: 295)
Name: NF9813_low_6
Description: NF9813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9813_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 30056551 - 30056280
Alignment:
| Q |
10 |
aaaggaaataatagtaagaaggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggcca |
109 |
Q |
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| T |
30056551 |
aaaggaaataatagtaagaaggttagtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggcca |
30056452 |
T |
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| Q |
110 |
atcaaccggtttccgttggtatcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056451 |
atcaaccggtttccgttggtatcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgt |
30056352 |
T |
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| Q |
210 |
aataatagttggttatggtacatcgaatgacggtactaaatattggttagtaaagaattcatggggcattag |
281 |
Q |
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| T |
30056351 |
aataatagttggttatggtacatcgaatgacggtactaaatattggttagtaaagaattcatggggcattag |
30056280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 29746751 - 29746986
Alignment:
| Q |
19 |
aatagtaagaaggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggccaatcaaccgg |
118 |
Q |
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| T |
29746751 |
aatagtaagaaggtgcatcaccaagttcagattaagggctacgagcaagtccctaaaaatagcgaggactcactacttaaagttgtggccaatcaaccgg |
29746850 |
T |
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| Q |
119 |
tttccgttggtatcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataatagt |
218 |
Q |
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| T |
29746851 |
tttcggttaatattgatatgagaggtatgctcaaattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaacaatagt |
29746950 |
T |
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| Q |
219 |
tggttatggtacatcgaatgacggtactaaatattg |
254 |
Q |
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| T |
29746951 |
tggctatggtacatcgaatgactgtactaaatattg |
29746986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 93 - 278
Target Start/End: Complemental strand, 30072992 - 30072803
Alignment:
| Q |
93 |
gcttaaagttgtggccaatcaaccggtttccgttggtatcgat----ataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtgg |
188 |
Q |
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||||| || |||||| |||||||||||||| ||| |||| ||| || || |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30072992 |
gcttatagctgtggctaatcaaccggtttcggttagtattgatgtttatgagaggtatgttcagattttactcaagtggaatatttacaggagaatgtgg |
30072893 |
T |
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| Q |
189 |
aactaagccaaaccatgctgtaataatagttggttatggtacatcgaatgacggtactaaatattggttagtaaagaattcatggggcat |
278 |
Q |
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| T |
30072892 |
aactaagccaaaccatgctgtaacaatagttggttatggtacatcgaatgacggtactaaatactggttagtaaagaattcatggggcat |
30072803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 29733456 - 29733224
Alignment:
| Q |
41 |
aagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggccaatcaaccggtttccgttggtatcgatataag |
140 |
Q |
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||||||| ||||||||||| || |||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||| ||||| || |
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| T |
29733456 |
aagttcaaattaagagctatgaagaagtccctagtaatagtgaagattcactacttaaagctgtggccaatcaaccggtttcggttggtattgatatgag |
29733357 |
T |
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| Q |
141 |
tggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataatagttggttatggtacatcgaatgac |
240 |
Q |
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|| ||| ||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || || |
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| T |
29733356 |
aggcatgttcaagttttactcaagtgggatttttacaggagaatgtggaactaagccaaaccatgctttaaccatagttggttatggtacatcaaaagat |
29733257 |
T |
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| Q |
241 |
ggtactaaatattggttagtaaagaattcatgg |
273 |
Q |
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|||| |||||||||||||| || || |||||| |
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| T |
29733256 |
ggtatcaaatattggttagtgaaaaactcatgg |
29733224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 273
Target Start/End: Complemental strand, 29730076 - 29729888
Alignment:
| Q |
85 |
gattcactgcttaaagttgtggccaatcaaccggtttccgttggtatcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaat |
184 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||| |||| ||||| || || ||| ||| |||||||||||||| || ||||||||||||| |
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| T |
29730076 |
gattcactgcttaaagctgtggccaatcaaccggtttcggttagtattgatatgagaggcatgttcaagttttactcaagtgggatttttacaggagaat |
29729977 |
T |
|
| Q |
185 |
gtggaactaagccaaaccatgctgtaataatagttggttatggtacatcgaatgacggtactaaatattggttagtaaagaattcatgg |
273 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||| || || |||| ||||||||||||||| || || |||||| |
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| T |
29729976 |
gtagaactaagccaaaccatgctgtaacaatagttggttatggtacatcaaaagatggtattaaatattggttagtgaaaaactcatgg |
29729888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 29935001 - 29934861
Alignment:
| Q |
135 |
tataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataatagttggttatggtacatcg |
234 |
Q |
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|||||| |||||| ||||||||||||| |||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||| |
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| T |
29935001 |
tataagaggtatgttcagattttactcgagtggaatatctacaggagaatgtggaactcagggaaaccatgctgtaacaatagttggctatggtacatcg |
29934902 |
T |
|
| Q |
235 |
aatgacggtactaaatattggttagtaaagaattcatgggg |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29934901 |
aatgacggtactaaatattggttagtaaagaattcatgggg |
29934861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 34759069 - 34759009
Alignment:
| Q |
39 |
ccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaa |
99 |
Q |
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||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||| |
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| T |
34759069 |
ccaagtttggattaagagctataagcaagtccctaaaaatagtgaggattcactacttaaa |
34759009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 31194252 - 31194201
Alignment:
| Q |
154 |
ttttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatg |
205 |
Q |
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||||||||||||||||| | ||||||||||||||||||| ||| | |||||| |
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| T |
31194252 |
ttttactcaagtggaatttatacaggagaatgtggaactgagctagaccatg |
31194201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 31185425 - 31185387
Alignment:
| Q |
154 |
ttttactcaagtggaatatttacaggagaatgtggaact |
192 |
Q |
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||||||||||||||||| | ||||||||||||||||||| |
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| T |
31185425 |
ttttactcaagtggaatttatacaggagaatgtggaact |
31185387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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