View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9813_low_9 (Length: 250)

Name: NF9813_low_9
Description: NF9813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9813_low_9
NF9813_low_9
[»] chr6 (2 HSPs)
chr6 (7-183)||(24475538-24475715)
chr6 (177-239)||(24475729-24475791)
[»] chr2 (3 HSPs)
chr2 (1-97)||(27095337-27095433)
chr2 (16-98)||(13806683-13806765)
chr2 (4-98)||(38459207-38459298)
[»] scaffold0003 (3 HSPs)
scaffold0003 (1-74)||(38179-38252)
scaffold0003 (1-74)||(17836-17909)
scaffold0003 (1-74)||(31982-32055)
[»] chr7 (1 HSPs)
chr7 (1-74)||(16429123-16429196)
[»] chr4 (3 HSPs)
chr4 (5-94)||(31189249-31189336)
chr4 (1-79)||(26133941-26134017)
chr4 (1-73)||(4876503-4876573)
[»] chr1 (1 HSPs)
chr1 (5-94)||(6183561-6183648)
[»] chr5 (1 HSPs)
chr5 (5-63)||(31132130-31132187)
[»] scaffold0884 (1 HSPs)
scaffold0884 (5-94)||(402-489)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 24475538 - 24475715
Alignment:
Q  7 gaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctctatccgtaaaat 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  24475538 gaaaactttggctaacttattcttacatcagtgggtgagaactgcctgaggtaaaaacaaattttcacttttaactaatccattcctctatccgtaaaac 24475637  T
Q  107 gtatccacacaaatttgcactttatcactctcaaacaaaccgtccaactctcaaat-caaataccaccgtttccttgc 183  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||  ||| ||||||||||||||||    
T  24475638 gtatccacacaaattttcactttatcactctcaaaaaaatcgtcctactctcaaataaaaaaaccaccgtttccttgc 24475715  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 24475729 - 24475791
Alignment:
Q  177 tccttgcaatcgatgctcaattgaactctcagagaatcccgttgaagctcaatcgaactctct 239  Q
    ||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  24475729 tccttgcaatcgatgctcaatcgaactctcaaagaatcccgtcgaagctcaatcgaactctct 24475791  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27095433 - 27095337
Alignment:
Q  1 ttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctctat 97  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||| |||| ||||||| || ||||||    
T  27095433 ttgactgaaaactttggctaacttatttttacttcagtggatgagaactgcctgatgtaaaaacaaattttcacctttaccttatccctttctctat 27095337  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 13806765 - 13806683
Alignment:
Q  16 ggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctctatc 98  Q
    ||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||| |||| ||||||| || |||||||    
T  13806765 ggctaacttatttttacttaagtggatgagaactgactgaggtaaaaacaaattttcacctttaccttatccctttctctatc 13806683  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 38459298 - 38459207
Alignment:
Q  4 agtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctctatc 98  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||| ||   ||||| |||| ||||||| ||||||||||    
T  38459298 agtgaaaactttggctaacttatttttacatcattgggtgagaactgcttgacgtaaaaaaaa---ttcacctttaccttatcccttcctctatc 38459207  T

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Target: scaffold0003 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38179 - 38252
Alignment:
Q  1 ttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcac 74  Q
    |||||||||||||||||||||||||||  ||||||||||||||| || || ||||||||||||||||| |||||    
T  38179 ttgagtgaaaactttggctaacttattactacatcagtgggtgacaagtgcctgaggtaaaaacaaatgttcac 38252  T

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Target: scaffold0003; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17836 - 17909
Alignment:
Q  1 ttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcac 74  Q
    ||||||||||||||||||||| |||||  ||||||||||||||| || || ||||||||||||||||| |||||    
T  17836 ttgagtgaaaactttggctaatttattactacatcagtgggtgacaagtgcctgaggtaaaaacaaatgttcac 17909  T

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Target: scaffold0003; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31982 - 32055
Alignment:
Q  1 ttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcac 74  Q
    ||||||||||||||||||||| |||||  ||||||||||||||| || || ||||||||||||||||| |||||    
T  31982 ttgagtgaaaactttggctaatttattactacatcagtgggtgacaagtgcctgaggtaaaaacaaatgttcac 32055  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16429123 - 16429196
Alignment:
Q  1 ttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcac 74  Q
    ||||||||||||||||||||| |||||  ||||||||||||||| || || ||||||||||||||||| |||||    
T  16429123 ttgagtgaaaactttggctaatttattactacatcagtgggtgacaagtgcctgaggtaaaaacaaatgttcac 16429196  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 31189249 - 31189336
Alignment:
Q  5 gtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctc 94  Q
    |||||||||||||||||| | |||| |||||||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||| ||||||    
T  31189249 gtgaaaactttggctaaccttttttcacatcagtgg-tgagaactgcctgaggtaaaaccaaattttcac-tttaccttatcccttcctc 31189336  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 26133941 - 26134017
Alignment:
Q  1 ttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcactttta 79  Q
    ||||||||||| |||||||||| | |||| |||||||||| |||||||||  ||||| |||||||||||||||| ||||    
T  26133941 ttgagtgaaaattttggctaacat-ttttcacatcagtgg-tgagaactgcatgagggaaaaacaaattttcaccttta 26134017  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4876503 - 4876573
Alignment:
Q  1 ttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttca 73  Q
    |||||||||||||||||||||||| |||| |||||||  ||| | ||||| ||||||| ||||||||||||||    
T  4876503 ttgagtgaaaactttggctaactt-ttttcacatcaggtggttaaaactgcctgaggt-aaaacaaattttca 4876573  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 6183561 - 6183648
Alignment:
Q  5 gtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctc 94  Q
    |||||||||||||||||||| |||| |||||||| ||||| ||||| |||| |  |||||| ||||||||||| | ||||||| ||||||    
T  6183561 gtgaaaactttggctaactt-ttttcacatcagt-ggtgaaaactgcctgaagggaaaacacattttcactttgaccttatcccttcctc 6183648  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 31132187 - 31132130
Alignment:
Q  5 gtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaa 63  Q
    ||||||||||| ||||| || |||| |||||||||||||| ||||| ||||||||||||    
T  31132187 gtgaaaactttagctaattt-ttttcacatcagtgggtgaaaactgcctgaggtaaaaa 31132130  T

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Target: scaffold0884 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 489 - 402
Alignment:
Q  5 gtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctc 94  Q
    ||||||||| |||||||||| |||| |||||||||| ||| ||||| |||| |  |||||| ||||||||||| | ||||||| ||||||    
T  489 gtgaaaactatggctaactt-ttttcacatcagtgg-tgaaaactgcctgaagggaaaacacattttcactttgaccttatcccttcctc 402  T

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