View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9815_high_1 (Length: 360)
Name: NF9815_high_1
Description: NF9815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9815_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 10596262 - 10595930
Alignment:
| Q |
18 |
ttttttgctatcagtttccttctcaaggcttcttattccatctccataacgaaacatgttcggatcacccttcacattaaagggcaaccatccactccac |
117 |
Q |
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| T |
10596262 |
ttttttgctatcagtttccttctcaaggcttcttattccatctccatcacgaaacatgttcggatcacccttcacatcaaagggcaaccatccactccac |
10596163 |
T |
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| Q |
118 |
attcttggctcaacttttggctgcacatcagcatttggccttttatcatgtaacattttatcctgctcatccaccttaaaattttccggttgtttgttac |
217 |
Q |
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| T |
10596162 |
attcttggctcaacttttggctgcacatcagcatttggccttttatcatgtaacaatttatcctgctcatccaccttaaaactttccggttgtttgttac |
10596063 |
T |
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| Q |
218 |
cataatactctggtggaatccaagccaaagggtatggaaaattcctaaactgaattggaaccatagcatcattctctttcttaccaacatcaggtttttg |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10596062 |
cataatactctggttgaatccaagccaaagggtatggaaaattcctaaactgaattggaaccatagcatcattctctttcttaccaacatcaggtttttg |
10595963 |
T |
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| Q |
318 |
ctcttccaccttcacagatttgtcttccctttg |
350 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
10595962 |
ctcttccaccttcacagatttgtcttccttttg |
10595930 |
T |
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