View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9815_high_2 (Length: 314)

Name: NF9815_high_2
Description: NF9815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9815_high_2
NF9815_high_2
[»] chr1 (2 HSPs)
chr1 (6-301)||(14005875-14006170)
chr1 (6-181)||(13932614-13932789)
[»] chr3 (22 HSPs)
chr3 (6-301)||(3884526-3884821)
chr3 (10-170)||(3914160-3914320)
chr3 (7-160)||(4080846-4080999)
chr3 (6-181)||(4061237-4061412)
chr3 (66-181)||(4140888-4141003)
chr3 (67-160)||(4129208-4129301)
chr3 (79-160)||(4115785-4115866)
chr3 (103-158)||(4093065-4093120)
chr3 (64-135)||(10888825-10888896)
chr3 (69-160)||(4123696-4123787)
chr3 (72-135)||(11131513-11131576)
chr3 (64-135)||(11149333-11149404)
chr3 (64-157)||(10088287-10088380)
chr3 (64-157)||(10195170-10195263)
chr3 (64-157)||(10434523-10434616)
chr3 (64-135)||(8860805-8860876)
chr3 (67-181)||(912198-912312)
chr3 (61-135)||(13332423-13332497)
chr3 (64-157)||(10580098-10580191)
chr3 (64-152)||(10376324-10376412)
chr3 (66-106)||(13170579-13170619)
chr3 (61-105)||(13289214-13289258)
[»] scaffold0267 (1 HSPs)
scaffold0267 (30-188)||(17907-18065)
[»] scaffold0083 (1 HSPs)
scaffold0083 (64-157)||(50284-50377)
[»] chr8 (1 HSPs)
chr8 (64-118)||(44958188-44958242)
[»] scaffold0002 (1 HSPs)
scaffold0002 (66-106)||(136369-136409)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 14005875 - 14006170
Alignment:
Q  6 agcctcagtgttgatctcatcaagcaaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14005875 agcctcagtgttgatctcatcaagcaaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttc 14005974  T
Q  106 tcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgaggagtgaaacatcaagttccttgctatgaaagaaatttaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14005975 tcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgaggagtgaaacatcaagttccttgctatgaaagaaatttaaaa 14006074  T
Q  206 actctttggaaacgatcttgtttaatagcacctctaccgaagccgaaaggaatgcttctcctacaaatgcagcagccatgtatgtatgttttttct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14006075 actctttggaaacgatcttgtttaatagcacctctaccgaagccgaaaggaatgcttctcctacaaatgcagcagccatgtatgtatgttttttct 14006170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 13932789 - 13932614
Alignment:
Q  6 agcctcagtgttgatctcatcaagcaaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttc 105  Q
    |||||| |||||||| ||||||| |||||||||||| ||||| ||| ||| |   | |  |||||||||||  || ||||||||||||||||| ||||||    
T  13932789 agcctcggtgttgatttcatcaaacaaatcatcagcttcaaagacagcatctcgcaacagatccagccattgcttaacagcagggttggtgatctgcttc 13932690  T
Q  106 tcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgaggagtgaaacatcaagtt 181  Q
    |||||||||||||  |  |||||||| ||||| | ||||||||  ||||||||||  |  |||| |||||||||||    
T  13932689 tcctcagcatcatgaagtacagcttgtagactcagcagtgttacgttcagcttttccaacagtgcaacatcaagtt 13932614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 3884821 - 3884526
Alignment:
Q  6 agcctcagtgttgatctcatcaagcaaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3884821 agcctcagtgttgatctcatcaagcaaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttc 3884722  T
Q  106 tcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgaggagtgaaacatcaagttccttgctatgaaagaaatttaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3884721 tcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgaggagtgaaacatcaagttccttgctatgaaagaaatttaaaa 3884622  T
Q  206 actctttggaaacgatcttgtttaatagcacctctaccgaagccgaaaggaatgcttctcctacaaatgcagcagccatgtatgtatgttttttct 301  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3884621 actcgttggaaacgatcttgtttaatagcacctctaccgaagccgaaaggaatgcttctcctacaaatgcagcagccatgtatgtatgttttttct 3884526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 3914160 - 3914320
Alignment:
Q  10 tcagtgttgatctcatcaagcaaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttctcct 109  Q
    ||||||||||| ||||| | |||||||||||||||| | | | ||| | | || ||||||| ||||| ||| |||||||||||||||||||| |||||||    
T  3914160 tcagtgttgatttcatccaacaaatcatcagcatcatagagagcatctcttagttcatccaaccattgtttaacagcagggttggtgatttgtttctcct 3914259  T
Q  110 cagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgaggagtga 170  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3914260 cagcatcattcatcacagcttgaagactcaacagtgttattttcagctttttgaggagtga 3914320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 4080846 - 4080999
Alignment:
Q  7 gcctcagtgttgatctcatcaagcaaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttct 106  Q
    |||||||||||||| || || | ||||| |||||| ||||| ||| ||| |   |||  |||||||||||  |||||||||||||||||||| |||||||    
T  4080846 gcctcagtgttgatttcgtctaacaaattatcagcttcaaagacagcatctcgcagcaaatccagccattgcttgacagcagggttggtgatctgcttct 4080945  T
Q  107 cctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttt 160  Q
    |||||||||||||||  |||||||| ||||| | ||||||||| ||||||||||    
T  4080946 cctcagcatcattcagtacagcttgcagactcatcagtgttatgttcagctttt 4080999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 4061237 - 4061412
Alignment:
Q  6 agcctcagtgttgatctcatcaagcaaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttc 105  Q
    ||||||||||||||| || |||| |||||||||||| ||||| ||| ||| |   | |  |||||||||||  |||||||||||||||||||| ||||||    
T  4061237 agcctcagtgttgatttcgtcaaacaaatcatcagcttcaaagacagcatctcgcaacagatccagccatttcttgacagcagggttggtgatctgcttc 4061336  T
Q  106 tcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgaggagtgaaacatcaagtt 181  Q
    |||||||||||||  |  |||||||| ||||| | ||||||||  ||||||||||  |  |||| |||||||||||    
T  4061337 tcctcagcatcatgaagtacagcttgcagactcagcagtgttacgttcagcttttccaacagtgcaacatcaagtt 4061412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 4141003 - 4140888
Alignment:
Q  66 atccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgagg 165  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||  |  |||||||||||||| | ||||||||| ||| ||||||| | |    
T  4141003 atccagccattctttaacagcaggattggtgatttgtttctcctcagcatcatgaagtacagcttgaagactcagcagtgttatcttctgctttttcaag 4140904  T
Q  166 agtgaaacatcaagtt 181  Q
    ||||||| ||| ||||    
T  4140903 agtgaaagatcgagtt 4140888  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 4129301 - 4129208
Alignment:
Q  67 tccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttt 160  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||||||||  |  |||||||||||||| |||| |||||| ||||||||||    
T  4129301 tccagccattgcttgacagcagggttggtgatctgtttctcctcagcatcatgaagtacagcttgaagactcaacattgttatcttcagctttt 4129208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 4115785 - 4115866
Alignment:
Q  79 ttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttt 160  Q
    ||||||||||| || ||||| || |||||||||||||||||||  |||||||||||||| | ||||||||| ||||||||||    
T  4115785 ttgacagcaggattagtgatctgtttctcctcagcatcattcagtacagcttgaagactcagcagtgttatcttcagctttt 4115866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 4093065 - 4093120
Alignment:
Q  103 ttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctt 158  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  4093065 ttctcctcagcatcattcagtacagcttgaagactcaacagtgttattttcagctt 4093120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 10888896 - 10888825
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaaga 135  Q
    ||||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||| || |||||||||||||    
T  10888896 tcatcaagccattgtttgacagcacggttgttgatctgcttctcctcagcatcatccagcacagcttgaaga 10888825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 4123787 - 4123696
Alignment:
Q  69 cagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttt 160  Q
    |||||| || ||||||  |||||||||||| || || |||||||||||||  |  |||||||||||||| | ||||||||||||||||||||    
T  4123787 cagccactccttgacattagggttggtgatctgtttgtcctcagcatcatgtagtacagcttgaagactcagcagtgttattttcagctttt 4123696  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 11131513 - 11131576
Alignment:
Q  72 ccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaaga 135  Q
    ||||| |||||||||| ||||| |||| ||||||||||||||||||| || |||||||||||||    
T  11131513 ccattttttgacagcacggttgttgatctgcttctcctcagcatcatccagcacagcttgaaga 11131576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 11149333 - 11149404
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaaga 135  Q
    ||||| ||||||| |||||||||||| ||| |||| |||||||| |||||||||| || |||||||||||||    
T  11149333 tcatcaagccattgtttgacagcaggattgttgatctgcttctcatcagcatcatccagcacagcttgaaga 11149404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 10088380 - 10088287
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagct 157  Q
    ||||| ||||||  |||||||||||| ||| |||| ||||||||||| ||||||| || |||| |||||||| | | ||||||| |||||||||    
T  10088380 tcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaacttgaagagtgagcagtgttgttttcagct 10088287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 10195263 - 10195170
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagct 157  Q
    ||||| ||||||  |||||||||||| ||| |||| ||||||||||| ||||||| || |||| |||||||| | | ||||||| |||||||||    
T  10195263 tcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaacttgaagagtgagcagtgttgttttcagct 10195170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 10434523 - 10434616
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagct 157  Q
    ||||| ||||||| |||||||||||| ||| |||| ||||||||||| ||||||| || |||| |||||||| | |  |||||| |||||||||    
T  10434523 tcatcaagccattgtttgacagcaggtttgttgatctgcttctcctctgcatcatccagcacaacttgaagagtgagaagtgttgttttcagct 10434616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 8860876 - 8860805
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaaga 135  Q
    ||||| ||||||| |||||||||| | ||| |||| ||||||||||| ||||||| || |||||||||||||    
T  8860876 tcatcaagccattgtttgacagcacgattgttgatctgcttctcctctgcatcatccagcacagcttgaaga 8860805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 912198 - 912312
Alignment:
Q  67 tccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagctttttgagga 166  Q
    |||| ||||| |||||||||| | ||  |||| || ||||||||||||||||| |  |  | ||||||||| ||||||||| |||| |||||||  | ||    
T  912198 tccaaccattgtttgacagcatgatttctgatctgtttctcctcagcatcatttagtattgattgaagactcaacagtgttgtttttagcttttccaaga 912297  T
Q  167 gtgaaacatcaagtt 181  Q
    |||||||||||||||    
T  912298 gtgaaacatcaagtt 912312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 13332497 - 13332423
Alignment:
Q  61 agctcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaaga 135  Q
    |||| ||||| ||||| ||||||||||| |||||||||||||||||  || ||||||| || ||| || ||||||    
T  13332497 agctgatccaaccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatccagcaccgcctgaaga 13332423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 10580191 - 10580098
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagct 157  Q
    ||||| ||||||  |||||||||||| ||  |||| ||||||||||| ||||||| || |||| |||||||| | | ||||||| |||| ||||    
T  10580191 tcatcaagccatagtttgacagcaggattattgatctgcttctcctctgcatcatccagcacaacttgaagagtgagcagtgttgttttaagct 10580098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 10376324 - 10376412
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttatttt 152  Q
    ||||| |||||||  ||||||| ||| ||| |||| ||||||||||| ||||||| || |||| |||||||| | | ||||||| ||||    
T  10376324 tcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatccagcacaacttgaagagtgagcagtgttgtttt 10376412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 13170619 - 13170579
Alignment:
Q  66 atccagccattctttgacagcagggttggtgatttgcttct 106  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
T  13170619 atccatccattgtttgacagcagtgttggtgatttgcttct 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 13289258 - 13289214
Alignment:
Q  61 agctcatccagccattctttgacagcagggttggtgatttgcttc 105  Q
    |||| ||||| ||||| ||||||||||| ||||||||||||||||    
T  13289258 agctgatccaaccattgtttgacagcagtgttggtgatttgcttc 13289214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 18065 - 17907
Alignment:
Q  30 caaatcatcagcatcaaaaacaacatgtgtgagctcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagct 129  Q
    |||||||||||| ||||| ||||||| |   || | | |||||||||  ||||||||||| ||||||||||| ||||| |||||||||||||  ||||||    
T  18065 caaatcatcagcttcaaagacaacatctcgcaggttacccagccattgcttgacagcaggattggtgatttgtttctcttcagcatcattcagtacagct 17966  T
Q  130 tgaagacttaacagtgttattttcagctttttgaggagtgaaacatcaagttccttgct 188  Q
    |||||||| | || ||||| ||| |||||||  | ||||||||  ||||||| ||||||    
T  17965 tgaagactcagcaatgttaattttagcttttccaagagtgaaatgtcaagtttcttgct 17907  T

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Target: scaffold0083 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 50284 - 50377
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcattcaacacagcttgaagacttaacagtgttattttcagct 157  Q
    ||||| ||||||  |||||||||||| ||| |||| ||||||||||||||||||| || |||| |||||||| | |  |||||| |||||||||    
T  50284 tcatcaagccatagtttgacagcaggattgttgatctgcttctcctcagcatcatccagcacaacttgaagagtgagaagtgttgttttcagct 50377  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 44958188 - 44958242
Alignment:
Q  64 tcatccagccattctttgacagcagggttggtgatttgcttctcctcagcatcat 118  Q
    ||||| ||||||| |||||||| | |||||||||||||||||||||| |||||||    
T  44958188 tcatcaagccattgtttgacagtaaggttggtgatttgcttctcctctgcatcat 44958242  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 136369 - 136409
Alignment:
Q  66 atccagccattctttgacagcagggttggtgatttgcttct 106  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
T  136369 atccatccattgtttgacagcagtgttggtgatttgcttct 136409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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