View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9815_high_8 (Length: 220)
Name: NF9815_high_8
Description: NF9815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9815_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 39780985 - 39780794
Alignment:
| Q |
13 |
caaaggcacaccctacagaaaaataccaatagctttagaaaaatattattagtcactagttgacacttcttgtaatactaacatactatcgtttgtaatt |
112 |
Q |
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| T |
39780985 |
caaaggcacaccctacagaaaaataccaatagctttagaaaaatattactagtcactagttcacacttcttgtaatactaacatactatcgtttgtaatt |
39780886 |
T |
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| Q |
113 |
ccaaaaaagatactaacaacataataacatactatcgtttcccatgcataataacacgcacaacataataatactaacatactatcatttgt |
204 |
Q |
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| T |
39780885 |
ccaaaaaagatactaacaacataataacatactatcgtttcccatgcataataacacgcacaacataataatactaacatactatcacttgt |
39780794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 39780817 - 39780778
Alignment:
| Q |
85 |
taatactaacatactatcgtttgtaattccaaaaaagata |
124 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
39780817 |
taatactaacatactatcacttgtaattccaaaaaagata |
39780778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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