View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9815_low_1 (Length: 654)

Name: NF9815_low_1
Description: NF9815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9815_low_1
NF9815_low_1
[»] chr6 (6 HSPs)
chr6 (72-642)||(2386226-2386795)
chr6 (420-468)||(24333044-24333092)
chr6 (421-462)||(3525236-3525277)
chr6 (423-464)||(4308887-4308928)
chr6 (423-460)||(31776191-31776228)
chr6 (422-454)||(30536883-30536915)
[»] chr2 (7 HSPs)
chr2 (422-464)||(37276854-37276896)
chr2 (423-464)||(37419586-37419627)
chr2 (422-464)||(1830149-1830191)
chr2 (422-468)||(15370241-15370287)
chr2 (424-461)||(40059381-40059418)
chr2 (424-461)||(40085281-40085318)
chr2 (425-461)||(43985322-43985358)
[»] chr4 (11 HSPs)
chr4 (421-454)||(28615454-28615487)
chr4 (421-464)||(679401-679444)
chr4 (421-468)||(41433481-41433528)
chr4 (423-466)||(53034718-53034761)
chr4 (422-464)||(22662169-22662211)
chr4 (422-464)||(22666648-22666690)
chr4 (421-462)||(27043747-27043788)
chr4 (423-456)||(52428782-52428815)
chr4 (421-453)||(7367971-7368003)
chr4 (422-462)||(25571371-25571411)
chr4 (423-471)||(54575522-54575570)
[»] chr3 (5 HSPs)
chr3 (421-462)||(25447162-25447203)
chr3 (421-462)||(36507009-36507050)
chr3 (421-463)||(47903997-47904039)
chr3 (425-462)||(26911703-26911740)
chr3 (426-462)||(33405114-33405150)
[»] chr8 (3 HSPs)
chr8 (425-468)||(39551130-39551173)
chr8 (421-454)||(10727464-10727497)
chr8 (422-462)||(38602439-38602479)
[»] chr7 (5 HSPs)
chr7 (421-468)||(28691753-28691800)
chr7 (421-468)||(41040271-41040318)
chr7 (425-462)||(9210933-9210970)
chr7 (421-462)||(37064385-37064426)
chr7 (422-462)||(44822070-44822110)
[»] chr5 (6 HSPs)
chr5 (425-472)||(18286893-18286940)
chr5 (422-464)||(3280654-3280696)
chr5 (421-462)||(32197845-32197886)
chr5 (421-453)||(10638452-10638484)
chr5 (422-454)||(32010065-32010097)
chr5 (422-454)||(40335791-40335823)
[»] chr1 (4 HSPs)
chr1 (429-468)||(4200340-4200379)
chr1 (422-472)||(37241739-37241788)
chr1 (423-464)||(6292602-6292643)
chr1 (421-454)||(30013996-30014029)


Alignment Details
Target: chr6 (Bit Score: 535; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 72 - 642
Target Start/End: Original strand, 2386226 - 2386795
Alignment:
Q  72 tgttacacccattaggcttccagcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtgttactacaaggt 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386226 tgttacacccattaggcttccagcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtgttactacaaggt 2386325  T
Q  172 agttcttcatcttcaccaagttgatcagctccaaaggcttgtagagatggattatatccaccttggcctaatgagattaaatagagagataatgaaagaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386326 agttcttcatcttcaccaagttgatcagctccaaaggcttgtagagatggattatatccaccttggcctaatgagattaaatagagagataatgaaagaa 2386425  T
Q  272 atgaagatgacattgatctgtttttgtgatgccatgatcttgctagggctgttgttgtcaatgctgcaagtccctataggaagaaaacacaagaaaaaat 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386426 atgaagatgacattgatctgtttttgtgatgccatgatcttgctagggctgttgttgtcaatgctgcaagtccctataggaagaaaacacaagaaaaaat 2386525  T
Q  372 gtcaataactagtgaagaaaaagttgaatattcaaattaacagtaactttctgtttggattgacttatttaagtttatctactgatataagcatttgcga 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  |||||||||||    
T  2386526 gtcaataactagtgaagaaaaagttgaatattcaaattaacagtaactttctgtttggattgacttatttaagtttatctacaga-aacagcatttgcga 2386624  T
Q  472 gcctttttgagaatatacagaaacagcttaaaaaatatccatgtgtagttttcagcttactttcataagccctcaaggactagcttatgataacatctta 571  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386625 gcctttttgagaatatacagaaacagcttaaaaaatgtccattcgtagttttcagcttactttcataagccctcaaggactagcttatgataacatctta 2386724  T
Q  572 tatgaattgtgtgtttctcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtgtatgatgtccat 642  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2386725 tatgaattgtgtgtttctcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtgtctgatgtccat 2386795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 468
Target Start/End: Complemental strand, 24333092 - 24333044
Alignment:
Q  420 ttctgtttggattgacttatttaagtttatctactgatataagcatttg 468  Q
    |||||||||||||||| ||||| ||||||| |||||| |||||||||||    
T  24333092 ttctgtttggattgacatatttcagtttatgtactgacataagcatttg 24333044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 3525277 - 3525236
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataag 462  Q
    |||||||||||||||| ||||||||||||||| ||| |||||    
T  3525277 tctgtttggattgactaatttaagtttatctagtgacataag 3525236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 4308928 - 4308887
Alignment:
Q  423 tgtttggattgacttatttaagtttatctactgatataagca 464  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagca 4308887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 460
Target Start/End: Original strand, 31776191 - 31776228
Alignment:
Q  423 tgtttggattgacttatttaagtttatctactgatata 460  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31776191 tgtttggattgacttatttgagcttatctactgatata 31776228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 454
Target Start/End: Original strand, 30536883 - 30536915
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctact 454  Q
    |||||||||||||||||||| ||||||||||||    
T  30536883 ctgtttggattgacttatttgagtttatctact 30536915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 464
Target Start/End: Complemental strand, 37276896 - 37276854
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataagca 464  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  37276896 ctgtttggatcgacttatttaagtttatctactaatataagca 37276854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 37419586 - 37419627
Alignment:
Q  423 tgtttggattgacttatttaagtttatctactgatataagca 464  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  37419586 tgtttggattgacttatttgagtttatctacttatataagca 37419627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 464
Target Start/End: Complemental strand, 1830191 - 1830149
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataagca 464  Q
    |||||||||||||||||||| ||||||| |||||| |||||||    
T  1830191 ctgtttggattgacttatttgagtttatttactgacataagca 1830149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 468
Target Start/End: Original strand, 15370241 - 15370287
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataagcatttg 468  Q
    |||||||||||||||||||| || ||||||||||  |||||||||||    
T  15370241 ctgtttggattgacttatttgagcttatctactggcataagcatttg 15370287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  424 gtttggattgacttatttaagtttatctactgatataa 461  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  424 gtttggattgacttatttaagtttatctactgatataa 461  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 43985358 - 43985322
Alignment:
Q  425 tttggattgacttatttaagtttatctactgatataa 461  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  43985358 tttggatcgacttatttaagtttatctactgacataa 43985322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 28615487 - 28615454
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctact 454  Q
    ||||||||||||||||||||||||||||||||||    
T  28615487 tctgtttggattgacttatttaagtttatctact 28615454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 464
Target Start/End: Complemental strand, 679444 - 679401
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataagca 464  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||    
T  679444 tctgtttgaattgacttatttgagtttatctactggtataagca 679401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 468
Target Start/End: Complemental strand, 41433528 - 41433481
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataagcatttg 468  Q
    |||||||| |||||||||||| ||||||||| |||| |||||||||||    
T  41433528 tctgtttgaattgacttatttgagtttatctcctgacataagcatttg 41433481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 53034718 - 53034761
Alignment:
Q  423 tgtttggattgacttatttaagtttatctactgatataagcatt 466  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  53034718 tgtttggtttgacttatttgagcttatctactgatataagcatt 53034761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 464
Target Start/End: Original strand, 22662169 - 22662211
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataagca 464  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22662169 ctgtttggattgacttatttgagtttatctactaacataagca 22662211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 464
Target Start/End: Original strand, 22666648 - 22666690
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataagca 464  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22666648 ctgtttggattgacttatttgagtttatctactaacataagca 22666690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 27043747 - 27043788
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataag 462  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  27043747 tctgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 52428815 - 52428782
Alignment:
Q  423 tgtttggattgacttatttaagtttatctactga 456  Q
    ||||||||||||||||||| ||||||||||||||    
T  52428815 tgtttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 453
Target Start/End: Original strand, 7367971 - 7368003
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctac 453  Q
    ||||||||||||||||||||| |||||||||||    
T  7367971 tctgtttggattgacttatttgagtttatctac 7368003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 25571411 - 25571371
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataag 462  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  25571411 ctgtttggattggcttatttgagtttatctactgacataag 25571371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 54575522 - 54575570
Alignment:
Q  423 tgtttggattgacttatttaagtttatctactgatataagcatttgcga 471  Q
    ||||||||||||||||||| ||||||| ||  || ||||||||||||||    
T  54575522 tgtttggattgacttatttgagtttatttatagacataagcatttgcga 54575570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 25447162 - 25447203
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataag 462  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  25447162 tctgtttggattgacttatttgagtttatctactgacataag 25447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 36507009 - 36507050
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataag 462  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  36507009 tctgtttggattggcttatttgagtttatctactgatataag 36507050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 463
Target Start/End: Original strand, 47903997 - 47904039
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataagc 463  Q
    ||||||||||||||||||||| ||||||||  |||||||||||    
T  47903997 tctgtttggattgacttatttgagtttatcctctgatataagc 47904039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 26911740 - 26911703
Alignment:
Q  425 tttggattgacttatttaagtttatctactgatataag 462  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  26911740 tttggattgacttatttgagtttatctactgacataag 26911703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 33405114 - 33405150
Alignment:
Q  426 ttggattgacttatttaagtttatctactgatataag 462  Q
    |||||||||||||||| |||||||||||||| |||||    
T  33405114 ttggattgacttatttgagtttatctactgacataag 33405150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 39551130 - 39551173
Alignment:
Q  425 tttggattgacttatttaagtttatctactgatataagcatttg 468  Q
    ||||||||||||||||| || |||||||| ||||||||||||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttg 39551173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 10727497 - 10727464
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctact 454  Q
    ||||||||||||||||||||| ||||||||||||    
T  10727497 tctgtttggattgacttatttgagtttatctact 10727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 38602479 - 38602439
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataag 462  Q
    |||||||||||||||||||| || ||||||||||| |||||    
T  38602479 ctgtttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 468
Target Start/End: Original strand, 28691753 - 28691800
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataagcatttg 468  Q
    ||||||||||||||||||||| ||||||||| || | |||||||||||    
T  28691753 tctgtttggattgacttatttgagtttatctgctaacataagcatttg 28691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 468
Target Start/End: Complemental strand, 41040318 - 41040271
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataagcatttg 468  Q
    |||||||| ||||| |||||| |||||||||||||||||||| |||||    
T  41040318 tctgtttgaattgatttatttgagtttatctactgatataagtatttg 41040271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 9210970 - 9210933
Alignment:
Q  425 tttggattgacttatttaagtttatctactgatataag 462  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataag 9210933  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 37064385 - 37064426
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataag 462  Q
    ||||||||||||||||||||| |  |||||||||||||||||    
T  37064385 tctgtttggattgacttatttgatcttatctactgatataag 37064426  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 44822110 - 44822070
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataag 462  Q
    |||||||||||||||||||| ||||||||| |||| |||||    
T  44822110 ctgtttggattgacttatttgagtttatctgctgacataag 44822070  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 472
Target Start/End: Complemental strand, 18286940 - 18286893
Alignment:
Q  425 tttggattgacttatttaagtttatctactgatataagcatttgcgag 472  Q
    |||||||||| |||||  |||||||||||| |||||||||||||||||    
T  18286940 tttggattgaattattcgagtttatctactaatataagcatttgcgag 18286893  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 464
Target Start/End: Original strand, 3280654 - 3280696
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataagca 464  Q
    ||||||||||||||||||||||  |||||||||||| ||||||    
T  3280654 ctgtttggattgacttatttaaacttatctactgatttaagca 3280696  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 32197886 - 32197845
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctactgatataag 462  Q
    ||||||||||||||||| ||| |||||||||||||| |||||    
T  32197886 tctgtttggattgacttttttgagtttatctactgacataag 32197845  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 453
Target Start/End: Original strand, 10638452 - 10638484
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctac 453  Q
    |||||||||||||||||||||||| ||||||||    
T  10638452 tctgtttggattgacttatttaagattatctac 10638484  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 454
Target Start/End: Complemental strand, 32010097 - 32010065
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctact 454  Q
    |||||||||||||||||||| ||||||||||||    
T  32010097 ctgtttggattgacttatttgagtttatctact 32010065  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 454
Target Start/End: Original strand, 40335791 - 40335823
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctact 454  Q
    |||||||||||||||||||| ||||||||||||    
T  40335791 ctgtttggattgacttatttgagtttatctact 40335823  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 468
Target Start/End: Complemental strand, 4200379 - 4200340
Alignment:
Q  429 gattgacttatttaagtttatctactgatataagcatttg 468  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4200379 gattgacttattttagtttatatactgatataagcatttg 4200340  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 37241739 - 37241788
Alignment:
Q  422 ctgtttggattgacttatttaagtttatctactgatataagcatttgcgag 472  Q
    ||||||||||||||||||||||| ||||||||||  ||||||| |||||||    
T  37241739 ctgtttggattgacttatttaagcttatctactg-cataagcacttgcgag 37241788  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 6292643 - 6292602
Alignment:
Q  423 tgtttggattgacttatttaagtttatctactgatataagca 464  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagca 6292602  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Original strand, 30013996 - 30014029
Alignment:
Q  421 tctgtttggattgacttatttaagtttatctact 454  Q
    ||||||||||||||||||||| ||||||||||||    
T  30013996 tctgtttggattgacttatttgagtttatctact 30014029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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