View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9815_low_12 (Length: 252)

Name: NF9815_low_12
Description: NF9815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9815_low_12
NF9815_low_12
[»] chr4 (32 HSPs)
chr4 (13-252)||(48485988-48486227)
chr4 (137-237)||(36920027-36920126)
chr4 (143-252)||(52942893-52943002)
chr4 (138-237)||(36921935-36922033)
chr4 (138-252)||(619872-619986)
chr4 (138-237)||(31850039-31850138)
chr4 (137-237)||(3825013-3825113)
chr4 (191-252)||(24878836-24878897)
chr4 (138-237)||(5637908-5638006)
chr4 (138-237)||(7941133-7941233)
chr4 (137-237)||(9174586-9174685)
chr4 (192-252)||(24880299-24880359)
chr4 (138-237)||(11434769-11434869)
chr4 (140-223)||(40091869-40091952)
chr4 (171-237)||(22803173-22803239)
chr4 (134-237)||(38408989-38409092)
chr4 (138-237)||(9148054-9148153)
chr4 (171-229)||(22801288-22801346)
chr4 (137-221)||(16932278-16932361)
chr4 (137-229)||(18846922-18847016)
chr4 (142-237)||(24888594-24888689)
chr4 (137-237)||(22044829-22044931)
chr4 (137-221)||(22780870-22780953)
chr4 (137-237)||(11006681-11006782)
chr4 (138-221)||(16934632-16934714)
chr4 (138-221)||(22783235-22783317)
chr4 (141-228)||(5198217-5198304)
chr4 (138-184)||(16631068-16631114)
chr4 (138-237)||(9176936-9177035)
chr4 (18-138)||(48478234-48478355)
chr4 (18-138)||(48883796-48883917)
chr4 (137-221)||(22048493-22048576)
[»] chr2 (12 HSPs)
chr2 (137-252)||(40032472-40032587)
chr2 (141-237)||(6259255-6259351)
chr2 (137-237)||(21521135-21521235)
chr2 (143-237)||(6264564-6264658)
chr2 (137-235)||(43623988-43624086)
chr2 (137-237)||(18800720-18800820)
chr2 (138-237)||(42064231-42064330)
chr2 (138-232)||(22407854-22407948)
chr2 (136-237)||(24162652-24162754)
chr2 (137-237)||(19502451-19502551)
chr2 (135-237)||(27104512-27104614)
chr2 (138-189)||(45332624-45332675)
[»] chr5 (24 HSPs)
chr5 (134-252)||(12556327-12556445)
chr5 (137-252)||(20504338-20504453)
chr5 (138-252)||(20507887-20508001)
chr5 (138-252)||(2818732-2818847)
chr5 (137-252)||(21947769-21947884)
chr5 (137-237)||(659712-659811)
chr5 (137-252)||(36402731-36402846)
chr5 (138-236)||(18186489-18186587)
chr5 (140-252)||(6756257-6756369)
chr5 (142-237)||(4236374-4236469)
chr5 (137-237)||(31466397-31466497)
chr5 (138-237)||(38881845-38881944)
chr5 (136-237)||(34479873-34479974)
chr5 (138-228)||(16775897-16775987)
chr5 (138-197)||(661227-661286)
chr5 (138-237)||(25921892-25921992)
chr5 (137-202)||(21684905-21684970)
chr5 (137-237)||(34477533-34477633)
chr5 (138-237)||(2174680-2174779)
chr5 (137-221)||(31544797-31544880)
chr5 (138-229)||(39797849-39797940)
chr5 (135-186)||(31179885-31179936)
chr5 (138-221)||(31542442-31542524)
chr5 (193-237)||(659886-659929)
[»] chr1 (27 HSPs)
chr1 (138-252)||(49687301-49687415)
chr1 (138-252)||(39462258-39462372)
chr1 (140-252)||(38925884-38925996)
chr1 (151-249)||(13214834-13214932)
chr1 (138-228)||(15823286-15823376)
chr1 (138-228)||(47451405-47451495)
chr1 (137-237)||(3580060-3580160)
chr1 (138-229)||(28840418-28840509)
chr1 (135-237)||(6822772-6822875)
chr1 (174-252)||(14098375-14098453)
chr1 (137-202)||(14098446-14098511)
chr1 (137-252)||(10400255-10400370)
chr1 (134-237)||(30790836-30790939)
chr1 (137-237)||(13761576-13761676)
chr1 (137-229)||(28842232-28842324)
chr1 (199-251)||(41646721-41646773)
chr1 (137-237)||(51752103-51752204)
chr1 (138-184)||(41646681-41646727)
chr1 (143-184)||(28207540-28207581)
chr1 (137-237)||(47177077-47177176)
chr1 (137-221)||(47179427-47179510)
chr1 (138-237)||(51749778-51749878)
chr1 (199-252)||(28207493-28207546)
chr1 (138-186)||(13461344-13461392)
chr1 (137-221)||(16225886-16225969)
chr1 (138-221)||(20291280-20291362)
chr1 (137-237)||(20302197-20302298)
[»] chr7 (12 HSPs)
chr7 (138-252)||(18567363-18567477)
chr7 (138-252)||(31435472-31435586)
chr7 (138-237)||(27306669-27306767)
chr7 (138-229)||(1049722-1049813)
chr7 (135-229)||(26804342-26804436)
chr7 (137-237)||(35378-35478)
chr7 (138-237)||(3878322-3878421)
chr7 (138-234)||(25542281-25542376)
chr7 (137-237)||(44313-44413)
chr7 (137-221)||(1047421-1047504)
chr7 (138-237)||(40837162-40837261)
chr7 (137-186)||(22392291-22392340)
[»] chr6 (14 HSPs)
chr6 (138-252)||(1072281-1072395)
chr6 (138-237)||(8995255-8995354)
chr6 (138-237)||(9019702-9019801)
chr6 (138-228)||(15530571-15530661)
chr6 (138-237)||(32279794-32279892)
chr6 (138-221)||(14507634-14507716)
chr6 (137-237)||(19227849-19227949)
chr6 (137-186)||(15533172-15533221)
chr6 (138-186)||(15541631-15541679)
chr6 (138-186)||(24191620-24191668)
chr6 (138-186)||(24192717-24192765)
chr6 (137-186)||(30729298-30729347)
chr6 (137-189)||(33308684-33308736)
chr6 (137-189)||(33310953-33311005)
[»] chr3 (24 HSPs)
chr3 (138-252)||(32264466-32264580)
chr3 (137-252)||(32218835-32218950)
chr3 (138-249)||(48362075-48362186)
chr3 (137-237)||(18099608-18099708)
chr3 (137-229)||(18097331-18097423)
chr3 (136-237)||(26720266-26720367)
chr3 (137-237)||(10956465-10956564)
chr3 (138-237)||(11162891-11162990)
chr3 (139-229)||(5191374-5191464)
chr3 (138-237)||(24176999-24177098)
chr3 (138-228)||(1321161-1321251)
chr3 (137-229)||(5523061-5523153)
chr3 (137-237)||(22114743-22114843)
chr3 (137-221)||(7606881-7606964)
chr3 (137-237)||(11170144-11170244)
chr3 (137-221)||(38210066-38210149)
chr3 (204-252)||(24979514-24979562)
chr3 (138-221)||(50493676-50493758)
chr3 (138-221)||(53896672-53896754)
chr3 (138-186)||(45882659-45882707)
chr3 (171-237)||(10192431-10192496)
chr3 (138-184)||(18162405-18162451)
chr3 (137-186)||(25388617-25388666)
chr3 (137-221)||(6063924-6064007)
[»] chr8 (12 HSPs)
chr8 (138-237)||(4423835-4423934)
chr8 (138-228)||(12517475-12517565)
chr8 (137-234)||(15072505-15072602)
chr8 (135-237)||(15067774-15067876)
chr8 (142-237)||(28252027-28252122)
chr8 (136-221)||(27826780-27826864)
chr8 (137-237)||(27829092-27829192)
chr8 (137-229)||(44720616-44720709)
chr8 (142-237)||(14807552-14807647)
chr8 (137-237)||(18812667-18812767)
chr8 (138-202)||(18810483-18810547)
chr8 (137-221)||(43079346-43079429)
[»] scaffold0131 (1 HSPs)
scaffold0131 (139-252)||(14768-14882)
[»] scaffold0250 (1 HSPs)
scaffold0250 (137-229)||(2628-2720)
[»] scaffold0025 (2 HSPs)
scaffold0025 (137-237)||(69734-69834)
scaffold0025 (137-237)||(73445-73545)
[»] scaffold0068 (1 HSPs)
scaffold0068 (137-202)||(28940-29005)
[»] scaffold0140 (1 HSPs)
scaffold0140 (134-162)||(21911-21939)
[»] scaffold0127 (1 HSPs)
scaffold0127 (138-185)||(13007-13054)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 48485988 - 48486227
Alignment:
Q  13 cacagacaaataacacacaatgtttatcacgtagttcggctaattgtgcctacctcttaggctagtgctactgcagtatttctccattaatcaagcttag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  48485988 cacagacaaataacacacaatgtttatcacgtagttcggctaattgtgcctacctcttagactagtgctacagcagtatttctccattaatcaagcttag 48486087  T
Q  113 ggtctacggagtgtaacttgtattttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  48486088 ggtctacggagtgtaacttgtattttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtggcacgattggaggt 48486187  T
Q  213 ttcagttttgaggcaagtcactggatttttcgtggcacga 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48486188 ttcagttttgaggcaagtcactggatttttcgtggcacga 48486227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 36920126 - 36920027
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||    
T  36920126 ttgtgagagttaacttaaaatcaggttctgca-aaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaattttgaggcaagtcactgg 36920028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 52943002 - 52942893
Alignment:
Q  143 gagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactggattttt 242  Q
    ||||||||||||||||||||  |||| ||||||||||||||||| || ||||||| |||| |||||||||||||| ||||||||||||||||| || |||    
T  52943002 gagttaacttaaaatcaggttttgcaaaaatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagctttgaggcaagtcactgaatattt 52942903  T
Q  243 cgtggcacga 252  Q
    ||||||||||    
T  52942902 cgtggcacga 52942893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 36922033 - 36921935
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||    
T  36922033 tgtgagagttaacttaaaatcaggttctgca-aaatcgtggtacgatggctgggcaacatggcacgattggaggtttcagttttgaggcaagtcactgga 36921935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 619986 - 619872
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||||||  || || ||| || ||||||| |  |  |||||| ||||||||||| |||||||||||||||||||||| ||||    
T  619986 tgtgagagttaacttaaaatcaggttatgtaggaattgtcgcacgattgaaggtcaacgtggcacaattggatgtttcagttttgaggcaagtcattgga 619887  T
Q  238 tttttcgtggcacga 252  Q
    |||||||||||||||    
T  619886 tttttcgtggcacga 619872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 31850138 - 31850039
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||| |  |||||| ||| |||||||||| |||| ||||||| |||| ||||||||||||||||||| |||||| |||||||    
T  31850138 tgtgagagttaacttaaaatcaagatctgcaggaattgtggcacgattgctgggcaacgtggcacgattggaggtttcagttttggggcaaggcactgga 31850039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 3825113 - 3825013
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    ||||||||||||||||||||||||||  |||||||| ||||| ||||||||||| ||||| | |||| |||||||||||||||||||||||||  |||||    
T  3825113 ttgtgagagttaacttaaaatcaggtttctgcagaa-tcgtgacacgatggctgggcaacatggcacgattggaggtttcagttttgaggcaaagcactg 3825015  T
Q  236 ga 237  Q
    ||    
T  3825014 ga 3825013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 24878836 - 24878897
Alignment:
Q  191 gcaacgtagcacaattggaggtttcagttttgaggcaagtcactggatttttcgtggcacga 252  Q
    ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24878836 gcaacgtggcacgattggaggtttcagttttgacgcaagtcactggatttttcgtggcacga 24878897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 5638006 - 5637908
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||  |||| ||| |||||||||||| |||| ||||||| |||| || ||||||||||||||||||||||| ||||||    
T  5638006 tgtgagagttaacttaaaatcaggtttctgcggaa-tcgtggcacgattgctgggcaacgtggcacgat-ggaggtttcagttttgaggcaaggcactgg 5637909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 7941133 - 7941233
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag--ttttgaggcaagtcact 234  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||| |||| | ||||||||||||  |||||||||||| ||||    
T  7941133 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcacga-tggaggtttcagttttttgaggcaaggcact 7941230  T
Q  235 gga 237  Q
    |||    
T  7941231 gga 7941233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 9174685 - 9174586
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttt-tgaggcaagtcactg 235  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| ||||  |||||||||||| | ||||||||| ||||| | ||||||| |||||    
T  9174685 ttgtgagagttaacttaaaatcaggttctgcag-aatcgtggcacgacggctaggcaacgtagcacga-tggaggttttagtttattaggcaaggcactg 9174588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 24880299 - 24880359
Alignment:
Q  192 caacgtagcacaattggaggtttcagttttgaggcaagtcactggatttttcgtggcacga 252  Q
    |||||| |||| | ||||||||||||||||||||||||||||||||||||||| |||||||    
T  24880299 caacgtggcacgaatggaggtttcagttttgaggcaagtcactggatttttcgcggcacga 24880359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 11434769 - 11434869
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag--ttttgaggcaagtcact 234  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||||||||| ||||||| |||| | ||||||||||||  |||||||||||| ||||    
T  11434769 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggtacgatggctgggcaacgtggcacga-tggaggtttcagttttttgaggcaagacact 11434866  T
Q  235 gga 237  Q
    |||    
T  11434867 gga 11434869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 40091952 - 40091869
Alignment:
Q  140 tgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttga 223  Q
    ||||||||||||||||||||||| |||||  |||||||||||| ||| || | ||||| |||| ||||||| ||||||||||||    
T  40091952 tgagagttaacttaaaatcaggttctgcaataatcgtggcacggtggttgggtaacgtggcacgattggagatttcagttttga 40091869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 22803239 - 22803173
Alignment:
Q  171 aatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||| |||||||||| ||||||| |||| |||||||||||||||||||||| ||| |||||||    
T  22803239 aatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagttttgaggaaaggcactgga 22803173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 38408989 - 38409092
Alignment:
Q  134 attttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtca 232  Q
    |||||||||||||||||||||||| || |  |||||||| |||||||||||| |||| ||| ||| |||| |||||||||||||  ||||||||||  ||    
T  38408989 attttgtgagagttaacttaaaattagatttctgcagaa-tcgtggcacgattgctgggcatcgtggcacgattggaggtttcaagtttgaggcaaagca 38409087  T
Q  233 ctgga 237  Q
    |||||    
T  38409088 ctgga 38409092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 9148054 - 9148153
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||| |  || ||| |||||||| ||||| |||| ||||||| || | |||||||||||||  ||||||||||  |||||||    
T  9148054 tgtgagagttaacttaaaatcaagatcttcaggaatcgtggtacgattgctgggcaacgtggcgcgattggaggtttcaagtttgaggcaaagcactgga 9148153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 22801346 - 22801288
Alignment:
Q  171 aatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    |||||||||||||||| || |||||||  ||| ||||||||||||||||||||||||||    
T  22801346 aatcgtggcacgatggttgggcaacgtgacacgattggaggtttcagttttgaggcaag 22801288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 16932361 - 16932278
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| ||||| ||||||| |||| | ||||||||| ||||||    
T  16932361 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttttagtttt 16932278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 18846922 - 18847016
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc---ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    |||||||||||||||||||||||| |    |||||||| |||||||||||| | || | | ||| |||| ||||||||||||||||||||||||||    
T  18846922 ttgtgagagttaacttaaaatcagatttttctgcagaa-tcgtggcacgattgttgggaatcgtggcacgattggaggtttcagttttgaggcaag 18847016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 24888594 - 24888689
Alignment:
Q  142 agagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||| |  |||||||| | ||||||||||||||  ||||||| |||| |||||||||||||  ||||||||||  |||||||    
T  24888594 agagttaacttaaaatcagatttctgcagaatt-gtggcacgatggctaggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 24888689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 22044931 - 22044829
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttca---gttttgaggcaagtcac 233  Q
    ||||||||||||||||||||||| |  |||||| |||||||||||||| |  | ||||||| |||| | |||||||||||    |||||||||||| |||    
T  22044931 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgaagggcaacgtggcacga-tggaggtttcattttttttgaggcaaggcac 22044833  T
Q  234 tgga 237  Q
    ||||    
T  22044832 tgga 22044829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 22780953 - 22780870
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||| |||| | ||||||||| ||||||    
T  22780953 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggtacgatagctgggcaacgtggcacga-tggaggttttagtttt 22780870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 11006782 - 11006681
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg--tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttc-agttttgaggcaagtcac 233  Q
    |||||||||||||||||||||||||  |  ||||| |||||||||||||| |||| ||||||| |||| | |||||||||| | |||| ||||||| |||    
T  11006782 ttgtgagagttaacttaaaatcaggttttatgcag-aatcgtggcacgatcgctgggcaacgtggcacga-tggaggtttcaattttttaggcaaggcac 11006685  T
Q  234 tgga 237  Q
    ||||    
T  11006684 tgga 11006681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 16934714 - 16934632
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||| ||||| ||||| | |||| | ||||||||| ||||||    
T  16934714 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacatggcacga-tggaggttttagtttt 16934632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 22783317 - 22783235
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    |||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||| |||| | ||||||||| ||||||    
T  22783317 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggtacgatagctgggcaacgtggcacga-tggaggttttagtttt 22783235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 5198217 - 5198304
Alignment:
Q  141 gagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaa 228  Q
    ||||||||||||||||||| |  |||||| |||| || || ||| |||| ||||||| |||| ||||||| |||||  ||||||||||    
T  5198217 gagagttaacttaaaatcaagatctgcaggaatcatgacatgattgctgggcaacgtggcacgattggagatttcaagtttgaggcaa 5198304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 16631068 - 16631114
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgat 184  Q
    ||||||||||||||||||||||||| ||| | |||||||| ||||||    
T  16631068 tgtgagagttaacttaaaatcaggttctggaaaaatcgtgccacgat 16631114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 9177035 - 9176936
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcactg 235  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||| || |  ||||||| |||| | ||||||||| || |||| ||||||| |||||    
T  9177035 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggttaggcaacgtggcacga-tggaggttttagttttttaggcaaggcactg 9176938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 48478234 - 48478355
Alignment:
Q  18 acaaataacacacaatgttt-atcacgtagttcggctaattgtgcctacctcttaggctagtgctactgcagtatttctccattaatcaagcttagggtc 116  Q
    ||||||| |||| ||||||| |||||| |||||||| |||||| | |||||||  | | | |||  ||||||||||| |  ||||||||||||||||||     
T  48478234 acaaataccacaaaatgtttgatcacggagttcggccaattgtacttacctctccgaccaatgcggctgcagtatttttgtattaatcaagcttagggtg 48478333  T
Q  117 tacggagtgtaacttgtatttt 138  Q
    ||| ||||  |||| |||||||    
T  48478334 tacagagtacaactggtatttt 48478355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 48883917 - 48883796
Alignment:
Q  18 acaaataacacacaatgttt-atcacgtagttcggctaattgtgcctacctcttaggctagtgctactgcagtatttctccattaatcaagcttagggtc 116  Q
    ||||||| |||| ||||||| |||||| ||||| || |||||| | |||||||  | | | |||  ||||||||||| || ||||||||||||||||||     
T  48883917 acaaataccacaaaatgtttgatcacggagttcagccaattgtacttacctctccgaccaatgcggctgcagtatttttctattaatcaagcttagggtg 48883818  T
Q  117 tacggagtgtaacttgtatttt 138  Q
    ||| ||||  |||| |||||||    
T  48883817 tacagagtacaactggtatttt 48883796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 22048576 - 22048493
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||| |  | |||  |||||||||||||| |  | ||||||| |||| | ||||||||||||||||    
T  22048576 ttgtgagagttaacttaaaatcaagatccgcaagaatcgtggcacgattgaagggcaacgtggcacga-tggaggtttcagtttt 22048493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 40032587 - 40032472
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||||||    
T  40032587 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttgagacaagtcactgg 40032488  T
Q  237 atttttcgtggcacga 252  Q
    ||||||||||||||||    
T  40032487 atttttcgtggcacga 40032472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 6259351 - 6259255
Alignment:
Q  141 gagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||| |||||||||||    
T  6259351 gagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctgtgcaacgtggcactattggatgtttcagttttgaggaaagtcactgga 6259255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 21521235 - 21521135
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||| ||||||    
T  21521235 ttgtgagagttaacttaaaatcaggttctacaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttgaagcaagccactgg 21521136  T
Q  237 a 237  Q
    |    
T  21521135 a 21521135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 6264658 - 6264564
Alignment:
Q  143 gagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||| |||||||||| || ||||||||| || ||||||| |||  |||||| |||||||||||||||||||||||||||    
T  6264658 gagttaacttaaaatcaggttctgcagaaattgttgcacgatggttgggcaacgtggcatgattggatgtttcagttttgaggcaagtcactgga 6264564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 43624086 - 43623988
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    |||||| |||||||||||||||||||  |||||||| || |||||||||||||| ||||| | |||| |||||||||||||||||||||||||| |||||    
T  43624086 ttgtgaaagttaacttaaaatcaggtttctgcagaa-tcatggcacgatggctgggcaacatggcacgattggaggtttcagttttgaggcaaggcactg 43623988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 18800820 - 18800720
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||| | | || |||||||  ||| |||||| ||||||||| ||| ||||||||||||    
T  18800820 ttgtgagagttaacttaaaatcatgttctggagaaatcgtggcacgtttgttgggcaacgtgacacgattggatgtttcagttatgaagcaagtcactgg 18800721  T
Q  237 a 237  Q
    |    
T  18800720 a 18800720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 42064231 - 42064330
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||| |  |||||| |||||||||||||| |||| ||||||| | || | |||||||||||  ||||||||||  |||||||    
T  42064231 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggtacgactggaggtttcaagtttgaggcaaagcactgga 42064330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 22407948 - 22407854
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtca 232  Q
    |||||||||||| ||||||| |||| |||||| |||||||||||||| |  | | ||| | |||| |||||| ||||||||||||||||||||||    
T  22407948 tgtgagagttaatttaaaattaggttctgcaggaatcgtggcacgattgaagggtaacatggcacgattggatgtttcagttttgaggcaagtca 22407854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 24162754 - 24162652
Alignment:
Q  136 tttgtgagagttaacttaaaatc-aggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag--ttttgaggcaagtca 232  Q
    ||||||||||||||||||||||| || | |||||| ||||||||||| |||| || ||||||| |||| | ||||||||||||  |||||||||||| ||    
T  24162754 tttgtgagagttaacttaaaatcaagtttctgcag-aatcgtggcacaatggttgggcaacgtggcacga-tggaggtttcagttttttgaggcaaggca 24162657  T
Q  233 ctgga 237  Q
    |||||    
T  24162656 ctgga 24162652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 19502551 - 19502451
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcact 234  Q
    |||||| |||||||||||||||||| | |||||| |||||||||||||||||   ||||||| |||| | |||||||||||| |||| ||||||| ||||    
T  19502551 ttgtgatagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagttttttaggcaaggcact 19502454  T
Q  235 gga 237  Q
    |||    
T  19502453 gga 19502451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 27104512 - 27104614
Alignment:
Q  135 ttttgtgagagttaacttaaaatcag-gtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtca 232  Q
    |||||| |||||||||||||||||||  | |||||| |||||||||||||| |  | ||||||| |||| | |||||||||||| |||||||||||| ||    
T  27104512 ttttgtaagagttaacttaaaatcagatttctgcag-aatcgtggcacgattgaagggcaacgtggcacga-tggaggtttcagtttttgaggcaaggca 27104609  T
Q  233 ctgga 237  Q
    |||||    
T  27104610 ctgga 27104614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 45332675 - 45332624
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctg 189  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||| |||||    
T  45332675 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctg 45332624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 12556445 - 12556327
Alignment:
Q  134 attttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcac 233  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  12556445 attttgtgagagttaatttaaaatcaggttctgcagaaatcgtggcataatggctgggcaacgtggcacaattggaggtttcagttttgaggcaagtcac 12556346  T
Q  234 tggatttttcgtggcacga 252  Q
    |||||||||||||||||||    
T  12556345 tggatttttcgtggcacga 12556327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 20504453 - 20504338
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||| ||||||||||| ||||||||||||||||| |||    
T  20504453 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatagctgggcaacgtggcacgattggaggttttagttttgaggcaagtcaatgg 20504354  T
Q  237 atttttcgtggcacga 252  Q
    ||||||||||||||||    
T  20504353 atttttcgtggcacga 20504338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 20508001 - 20507887
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  20508001 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatagttgggcaacgtagcacgattggaggttttagttttgaggcaagtcattgga 20507902  T
Q  238 tttttcgtggcacga 252  Q
    |||||||||||||||    
T  20507901 tttttcgtggcacga 20507887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 2818847 - 2818732
Alignment:
Q  138 tgtgagagttaa-cttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||||||||  ||||| | |||| |||||||||||||||||||||||||||||||||    
T  2818847 tgtgagagttaaacttaaaattaggttctgcagaaatcgtggcacgatggctaggcaacatggcacgattggaggtttcagttttgaggcaagtcactgg 2818748  T
Q  237 atttttcgtggcacga 252  Q
    ||||||||||||||||    
T  2818747 atttttcgtggcacga 2818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 21947769 - 21947884
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||  ||| |||||||||||||||||||||| ||||||||||    
T  21947769 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctaggcaacgtgacacgattggaggtttcagttttgaggtaagtcactgg 21947868  T
Q  237 atttttcgtggcacga 252  Q
    | ||| ||||||||||    
T  21947869 actttacgtggcacga 21947884  T

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Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 659712 - 659811
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||| |||| |||||||||||||| ||||||||||||||||||    
T  659712 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctaggcaacgtggcacgattggaggtttcag-tttgaggcaagtcactgg 659810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 36402846 - 36402731
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    ||||||||||||||||||||| ||||  |||||||| ||  ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  36402846 ttgtgagagttaacttaaaattaggtttctgcagaa-tctaggcacgatggctgggcaacatagcacgattggaggtttcagttttgaggcaagtcactg 36402748  T
Q  236 gatttttcgtggcacga 252  Q
    | |||||||||||||||    
T  36402747 gttttttcgtggcacga 36402731  T

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Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 18186587 - 18186489
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||| ||  |||||||| |||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  18186587 tgtgagagttaacttaaaatcaagtttctgcagaa-tcgtggtacgatggctgggcaacgtggcacgattggaggtttcagttttgaggcaagtcactgg 18186489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 6756257 - 6756369
Alignment:
Q  140 tgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactggatt 239  Q
    |||| ||||| |||||||||||| || ||||||||||||||||||| |||   ||| | |||| ||| |||||||||  |||||||||||||||||||||    
T  6756257 tgagggttaatttaaaatcaggttctacagaaatcgtggcacgatgcctggataacatggcacgattagaggtttcaactttgaggcaagtcactggatt 6756356  T
Q  240 tttcgtggcacga 252  Q
    |||||||||||||    
T  6756357 tttcgtggcacga 6756369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 4236374 - 4236469
Alignment:
Q  142 agagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||| |  |||||||| | ||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||| |||||||    
T  4236374 agagttaacttaaaatcagatttctgcagaatt-gtggcacgatggctgggcaacgtggcacgattggaggtttcagttttaaggcaaggcactgga 4236469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 31466497 - 31466397
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||| |  | ||||||| |||| ||  || ||||||||| ||||||||||||||||    
T  31466497 ttgtgagagttaacttaaaatcaggttttgcaggaatcgtggcacgattgaagggcaacgtggcacgatgagatgtttcagttatgaggcaagtcactgg 31466398  T
Q  237 a 237  Q
    |    
T  31466397 a 31466397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 38881845 - 38881944
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||| |  |||||| |||||||||||||| |||| ||||||| |||| | ||||||||| || |||||||||||| ||||||    
T  38881845 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggcacga-tggaggttttagtttttgaggcaaggcactgg 38881943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 34479974 - 34479873
Alignment:
Q  136 tttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcac 233  Q
    |||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||| |||| | ||||||||| || |||| ||||||| |||    
T  34479974 tttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcacga-tggaggttttagttttttaggcaaggcac 34479877  T
Q  234 tgga 237  Q
    ||||    
T  34479876 tgga 34479873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 16775897 - 16775987
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaa 228  Q
    ||||||| ||||||||||||||||  |||||| |||||||||||||||||   |||||||  ||| |||||||||||||  ||||||||||    
T  16775897 tgtgagaattaacttaaaatcaggatctgcaggaatcgtggcacgatggcaaggcaacgtgacacgattggaggtttcaagtttgaggcaa 16775987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 661286 - 661227
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgt 197  Q
    ||||||||||||||||||||||||| ||||||||||||||| | |||||||  |||||||    
T  661286 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggtatgatggctaggcaacgt 661227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 25921992 - 25921892
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag--ttttgaggcaagtcact 234  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||||| ||  |||||| |||| | ||||||||||||  |||||||||||| ||||    
T  25921992 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggttggacaacgtggcacga-tggaggtttcagttttttgaggcaaggcact 25921895  T
Q  235 gga 237  Q
    |||    
T  25921894 gga 25921892  T

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Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 21684970 - 21684905
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcac 202  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||| ||||    
T  21684970 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcac 21684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 34477633 - 34477533
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcact 234  Q
    ||||||||||||||||||||||| ||  |||||||| ||||||||||||||||| ||||||| |||| | ||||||||| || |||| ||||||| ||||    
T  34477633 ttgtgagagttaacttaaaatcaagtttctgcagaa-tcgtggcacgatggctgggcaacgtggcacga-tggaggttttagttttttaggcaaggcact 34477536  T
Q  235 gga 237  Q
    |||    
T  34477535 gga 34477533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 2174680 - 2174779
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcactg 235  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||||||   ||||||| |||| | |||||||||||| |||| ||||||| |||||    
T  2174680 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagttttttaggcaaggcactg 2174777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 31544797 - 31544880
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||||||| |||| ||||||| |||| | ||||||||| ||||||    
T  31544797 ttgtgagagttaacttaaaatcaggtttctgca-aaatcgtggcacgatagctgggcaacgtggcacga-tggaggttttagtttt 31544880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 39797849 - 39797940
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaag 229  Q
    |||||||||||||||||||||||| | |||||  ||||||||||||||||||| ||||||| |||  | |||||||||||| ||||||||||||    
T  39797849 tgtgagagttaacttaaaatcaggtttctgca-taatcgtggcacgatggctgggcaacgtggcatga-tggaggtttcagtttttgaggcaag 39797940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 31179936 - 31179885
Alignment:
Q  135 ttttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatgg 186  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  31179936 ttttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 31179885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 31542442 - 31542524
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    |||||||||||||||||||||||| | ||||| |||||||| |||||| |||| ||||||| |||| | ||||||||| ||||||    
T  31542442 tgtgagagttaacttaaaatcaggtttctgca-aaatcgtgacacgatagctgggcaacgtggcacga-tggaggttttagtttt 31542524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 659929 - 659886
Alignment:
Q  193 aacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||| |||| |||||||||||||| |||||||||||||||||||    
T  659929 aacgtggcacgattggaggtttcag-tttgaggcaagtcactgga 659886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 49687301 - 49687415
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||||||  || ||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  49687301 tgtgagagttaacttaaaatcaggttatgtagaaatcgtggcatgatggctgggcaacgtggcacaattggaggtttcagttttgaggcaagtcactgga 49687400  T
Q  238 tttttcgtggcacga 252  Q
    |||||||||||||||    
T  49687401 tttttcgtggcacga 49687415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 39462258 - 39462372
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| |||| || ||||||| |||| ||| ||||||||||||||||||||||||| ||||    
T  39462258 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgacacaatggttgggcaacgtggcacgattagaggtttcagttttgaggcaagtcagtgga 39462357  T
Q  238 tttttcgtggcacga 252  Q
    |||||||||||||||    
T  39462358 tttttcgtggcacga 39462372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 38925996 - 38925884
Alignment:
Q  140 tgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactggatt 239  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  38925996 tgagagttaacttaaaatcaggttccgcagaaatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagttttgagacaagttactggatt 38925897  T
Q  240 tttcgtggcacga 252  Q
    ||| |||||||||    
T  38925896 ttttgtggcacga 38925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 13214834 - 13214932
Alignment:
Q  151 ttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactggatttttcgtggca 249  Q
    ||||||||||||  |||| ||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13214834 ttaaaatcaggttatgcaaaaatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagttttgaggcaagtcactggatttttcgtggca 13214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 15823286 - 15823376
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaa 228  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||||| |||| |||||||||||||  ||||||||||    
T  15823286 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 15823376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 47451405 - 47451495
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaa 228  Q
    ||||||||||||||| ||||||| |  ||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||||||||    
T  47451405 tgtgagagttaacttcaaatcagattttgcagaaatcgtggcacgatggctgggcaatgtggcacgattggaggtttcagttttgaggcaa 47451495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 3580160 - 3580060
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    ||||| ||||||||||||||||||||  ||||| |||||||||||||| || | |||||||  |||||||||| ||||||||| |||||||||||| |||    
T  3580160 ttgtgggagttaacttaaaatcaggttatgcaggaatcgtggcacgattgcagggcaacgtgacacaattggatgtttcagttatgaggcaagtcattgg 3580061  T
Q  237 a 237  Q
    |    
T  3580060 a 3580060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 28840418 - 28840509
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    ||||| ||||||||||||||||||  |||||| |||||||||||||||||   ||||||| |||| |||||||||||||||||| |||||||    
T  28840418 tgtgaaagttaacttaaaatcaggatctgcaggaatcgtggcacgatggcaaggcaacgtggcacgattggaggtttcagtttttaggcaag 28840509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 6822772 - 6822875
Alignment:
Q  135 ttttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag--ttttgaggcaagtc 231  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||| |||| | ||||||||||||  |||||||||||| |    
T  6822772 ttttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcacga-tggaggtttcagttttttgaggcaaggc 6822869  T
Q  232 actgga 237  Q
    ||||||    
T  6822870 actgga 6822875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 14098453 - 14098375
Alignment:
Q  174 cgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactggatttttcgtggcacga 252  Q
    ||||||||||||| |||||| ||| |||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  14098453 cgtggcacgatggttgagcaccgtggcacgattggaggtttcagctttgacgcaagtcactggatttttcgttgcacga 14098375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 14098511 - 14098446
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcac 202  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||    
T  14098511 ttgtgagagttaacttaaaatcagattctgcagaaatcgtggcacgatggctgagcaccgtggcac 14098446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 10400370 - 10400255
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    ||||||||||||||||||||||||||  |||| ||| |||||||||||| |||| ||||||| |||| |||||||||||||  ||||||||||  |||||    
T  10400370 ttgtgagagttaacttaaaatcaggtttctgcggaa-tcgtggcacgattgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 10400272  T
Q  236 gatttttcgtggcacga 252  Q
    ||  | |||||||||||    
T  10400271 gaaatatcgtggcacga 10400255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 30790939 - 30790836
Alignment:
Q  134 attttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcac 233  Q
    |||||||||||| |||||||||| ||||| ||| |||||||||| |||| | || |||||| || |||| |||||| ||||||||| ||| |||||||||    
T  30790939 attttgtgagagctaacttaaaaccaggttctggagaaatcgtgacacgtttgcagagcaatgtggcacgattggatgtttcagttatgaagcaagtcac 30790840  T
Q  234 tgga 237  Q
    ||||    
T  30790839 tgga 30790836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 13761576 - 13761676
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcact 234  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||| |||  | |||||||||||| |||||||||||| ||||    
T  13761576 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcatga-tggaggtttcagtttttgaggcaaggcact 13761673  T
Q  235 gga 237  Q
    |||    
T  13761674 gga 13761676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 28842232 - 28842324
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    |||||| ||||||||||||||||||  ||| || |||||||||||||||||   || |||| |||| |||||||||||||||||| |||||||    
T  28842232 ttgtgaaagttaacttaaaatcaggatctgtaggaatcgtggcacgatggcaaggctacgtggcacgattggaggtttcagtttttaggcaag 28842324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 41646721 - 41646773
Alignment:
Q  199 gcacaattggaggtttcagttttgaggcaagtcactggatttttcgtggcacg 251  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41646721 gcacgattagaggtttcagttttgaggcaagtcactggatttttcgtggcacg 41646773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 51752103 - 51752204
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag--ttttgaggcaagtcac 233  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||||||| || ||||||| |||| | ||||||||||||  |||||||||||| |||    
T  51752103 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggttgggcaacgtggcacga-tggaggtttcagttttttgaggcaaggcac 51752200  T
Q  234 tgga 237  Q
    ||||    
T  51752201 tgga 51752204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 41646681 - 41646727
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgat 184  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  41646681 tgtgagagttaacttaaaatcatgttctgcagaaatcgtggcacgat 41646727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 28207581 - 28207540
Alignment:
Q  143 gagttaacttaaaatcaggtcctgcagaaatcgtggcacgat 184  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  28207581 gagttaacttaaaatcaggttctgcagaaatcgtggcacgat 28207540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 47177077 - 47177176
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| | ||| ||||||| |||| | ||||||||| ||||||  |||||| |||||    
T  47177077 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacgactgggcaacgtggcacga-tggaggttttagtttttgggcaagacactg 47177174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 47179427 - 47179510
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| ||||| ||||||| |||| | ||||||||| ||||||    
T  47179427 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttttagtttt 47179510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 51749778 - 51749878
Alignment:
Q  138 tgtgagagttaacttaaaatc-aggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag--ttttgaggcaagtcact 234  Q
    ||||||||||||||||||||| || | |||||| |||||||||||||||| || ||||||| | || | ||||||||||||  |||||||||||| ||||    
T  51749778 tgtgagagttaacttaaaatcaagtttctgcag-aatcgtggcacgatggttgggcaacgtggtacga-tggaggtttcagttttttgaggcaaggcact 51749875  T
Q  235 gga 237  Q
    |||    
T  51749876 gga 51749878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 28207546 - 28207493
Alignment:
Q  199 gcacaattggaggtttcagttttgaggcaagtcactggatttttcgtggcacga 252  Q
    |||| |||||||||||||  |||||||||||||| |||||||||| ||||||||    
T  28207546 gcacgattggaggtttcaactttgaggcaagtcattggatttttcatggcacga 28207493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 13461392 - 13461344
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 186  Q
    ||||||||||||||||||||||||  |||||| ||||||| ||||||||    
T  13461392 tgtgagagttaacttaaaatcaggatctgcaggaatcgtgccacgatgg 13461344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 16225886 - 16225969
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    |||| |||||||||||||||||||| | |||||| ||||||||||||| || || ||||||| |||| | ||||||||| ||||||    
T  16225886 ttgtaagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggttgggcaacgtggcacga-tggaggttttagtttt 16225969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 20291280 - 20291362
Alignment:
Q  138 tgtgagagttaacttaaaatcag-gtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    |||||||||||||||||||||||  | |||||| |||||||||||||||||   ||||||| ||||   ||||||||||||||||    
T  20291280 tgtgagagttaacttaaaatcagatttctgcag-aatcgtggcacgatggcaaggcaacgtggcac-ggtggaggtttcagtttt 20291362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 20302197 - 20302298
Alignment:
Q  137 ttgtgagagttaacttaaaatcag-gtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag--ttttgaggcaagtcac 233  Q
    ||||||||||||||||||||||||  | |||||| ||||| |||| ||||||   ||||||| |||| | ||||||||||||  |||||||||||| |||    
T  20302197 ttgtgagagttaacttaaaatcagatttctgcag-aatcgcggcatgatggcaaggcaacgtggcacga-tggaggtttcagttttttgaggcaaggcac 20302294  T
Q  234 tgga 237  Q
    ||||    
T  20302295 tgga 20302298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 18567363 - 18567477
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||| |||||||||||||| || |||||||||||||||||| |||| |||| || |||| ||||||||||||||||||||||||||||||||||    
T  18567363 tgtgagagttgacttaaaatcaggttctacagaaatcgtggcacgatagctgggcaaagtggcacgattggaggtttcagttttgaggcaagtcactgga 18567462  T
Q  238 tttttcgtggcacga 252  Q
    |||||||||||||||    
T  18567463 tttttcgtggcacga 18567477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 31435586 - 31435472
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||| |||||||||||||| || |||||||||||||||||| |||| |||| || |||| ||||||||||||||||||||||||||||||||||    
T  31435586 tgtgagagttgacttaaaatcaggttctacagaaatcgtggcacgatagctgggcaaagtggcacgattggaggtttcagttttgaggcaagtcactgga 31435487  T
Q  238 tttttcgtggcacga 252  Q
    |||||||||||||||    
T  31435486 tttttcgtggcacga 31435472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 27306767 - 27306669
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||| ||||  |||| ||||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||| ||||    
T  27306767 tgtgagagttaacttaaaataaggttttgca-aaatcgtggcacgatggctggacaacgtggcacgattggaggtttcagttttgaggcaagtcattgga 27306669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 1049813 - 1049722
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    |||||||||||||||||||||| |  |||||| |||||||||||||| |||| ||||||| |||| |||||||||||||||||||| |||||    
T  1049813 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggcacgattggaggtttcagttttgaagcaag 1049722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 26804342 - 26804436
Alignment:
Q  135 ttttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    ||||||||||||||||||||||||||||  || ||||| ||||||||||||||||| ||||||| | || ||||||||||||||||||||||||||    
T  26804342 ttttgtgagagttaacttaaaatcaggtttctacagaa-tcgtggcacgatggctgggcaacgtggtacgattggaggtttcagttttgaggcaag 26804436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 35378 - 35478
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    ||||||||||||||||||||||| |  |||||| |||||||||||||| |||  ||||||| |||| |||||||||||||  ||||||||||  ||||||    
T  35378 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctaggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 35477  T
Q  237 a 237  Q
    |    
T  35478 a 35478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 3878322 - 3878421
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    ||||||||||||||||||||||| |  |||||||| ||||||||||||||||| ||||||| |||| |||||||||||||  ||||||||||  ||||||    
T  3878322 tgtgagagttaacttaaaatcagatttctgcagaa-tcgtggcacgatggctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 3878420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 25542281 - 25542376
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcact 234  Q
    |||||||||||||||||||||| |  |||||| ||| |||||||||| |||| ||||||| |||| |||||||||||||||||| ||||||| ||||    
T  25542281 tgtgagagttaacttaaaatcaagatctgcaggaat-gtggcacgattgctgggcaacgtggcacgattggaggtttcagttttaaggcaaggcact 25542376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 44313 - 44413
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    ||||||||||||||||||||||| |  |||||| ||||||||||||||  ||| |||| || |||| |||||||||||||  ||||| ||||  ||||||    
T  44313 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgatttctgggcaatgtggcacgattggaggtttcaagtttgacgcaaagcactgg 44412  T
Q  237 a 237  Q
    |    
T  44413 a 44413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 1047504 - 1047421
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| ||||| ||||||| |||| | ||||||||| ||||||    
T  1047504 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttttagtttt 1047421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 40837261 - 40837162
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcactg 235  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||||||  |  |||||| |||| | |||||||||||| |||| ||||||| |||||    
T  40837261 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggtcggacaacgtggcacga-tggaggtttcagttttttaggcaaggcactg 40837164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 22392291 - 22392340
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 186  Q
    ||||||||||||| ||||||||||||  || |||||||||| ||||||||    
T  22392291 ttgtgagagttaatttaaaatcaggttatggagaaatcgtgccacgatgg 22392340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 1072395 - 1072281
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||| |||| ||||||||||| ||||||||||||||||| ||||    
T  1072395 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggtacgatggttgggcaacgtggcacgattggaggtttaagttttgaggcaagtcattgga 1072296  T
Q  238 tttttcgtggcacga 252  Q
    |||||||||||||||    
T  1072295 tttttcgtggcacga 1072281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 8995255 - 8995354
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||||  ||| || ||||||||||||||||||| ||||||| |||| ||||||||||||||||||  |||||| |||||||    
T  8995255 tgtgagagttaacttaaaatcaggatctgtaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttttgggcaaggcactgga 8995354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 9019702 - 9019801
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||||  ||| || ||||||||||||||||||| ||||||| |||| ||||||||||||||||||  |||||| |||||||    
T  9019702 tgtgagagttaacttaaaatcaggatctgtaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttttgggcaaggcactgga 9019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 15530661 - 15530571
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaa 228  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||| | ||||| ||||||||||||||||||  ||||||||||    
T  15530661 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatggctgggtaacgtggcacaattggaggtttcaagtttgaggcaa 15530571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 32279794 - 32279892
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||| || ||||| || |||| |||||| | || ||||||| |||| |||||| ||||||||| ||||||||||| |||||    
T  32279794 tgtgagagttaacttaaaatcagttc-tgcaggaaacgtgacacgattgttgggcaacgtggcacgattggatgtttcagttctgaggcaagtcgctgga 32279892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 14507716 - 14507634
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||| |  |||||||| ||||||||||||||||| ||||||| |||| | ||||||||||||||||    
T  14507716 tgtgagagttaacttaaaatcagatttctgcagaa-tcgtggcacgatggctgggcaacgtggcacga-tggaggtttcagtttt 14507634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 19227949 - 19227849
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttc-agttttgaggcaagtcactg 235  Q
    ||||||||||||||||||||| | |  |||||| |||||||||||||||| || ||||||| |||  | |||||||||| | |||||||||||| |||||    
T  19227949 ttgtgagagttaacttaaaattaagatctgcaggaatcgtggcacgatggttgggcaacgtggcatga-tggaggtttcaatttttgaggcaaggcactg 19227851  T
Q  236 ga 237  Q
    ||    
T  19227850 ga 19227849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 15533221 - 15533172
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 186  Q
    |||||||||||||||||||||||||  || ||||||||||| ||||||||    
T  15533221 ttgtgagagttaacttaaaatcaggatctacagaaatcgtgccacgatgg 15533172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 15541679 - 15541631
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 186  Q
    ||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  15541679 tgtgagagttaacttaaaatcaggatttgcagaaatcgtgccacgatgg 15541631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 24191668 - 24191620
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 186  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||||||    
T  24191668 tgtgagagttaacttaaaatcaggttttacagaaatcgtgccacgatgg 24191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 24192765 - 24192717
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 186  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||||||    
T  24192765 tgtgagagttaacttaaaatcaggttttacagaaatcgtgccacgatgg 24192717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 30729347 - 30729298
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 186  Q
    |||||||||||||||||| ||||||  ||||| |||||||| ||||||||    
T  30729347 ttgtgagagttaacttaatatcaggatctgcaaaaatcgtgccacgatgg 30729298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 33308684 - 33308736
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctg 189  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| |||||    
T  33308684 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctg 33308736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 33310953 - 33311005
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctg 189  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| |||||    
T  33310953 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctg 33311005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 32264580 - 32264466
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||| | ||||| |||| |||||||||||||| |||||||||||||||||||    
T  32264580 tgtgagagttaacttaaaatcaggttttgcagaaatcgtggcacgatggctg-ggaacgtggcacgattggaggtttcagtttttgaggcaagtcactgg 32264482  T
Q  237 atttttcgtggcacga 252  Q
    ||||||||||||||||    
T  32264481 atttttcgtggcacga 32264466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 32218835 - 32218950
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  || ||||||| |||| |||||||||||||  ||||||||||||| ||||    
T  32218835 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgattgggcaacgtggcacgattggaggtttcaactttgaggcaagtcgctgg 32218934  T
Q  237 atttttcgtggcacga 252  Q
    ||||| ||||||||||    
T  32218935 attttccgtggcacga 32218950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 48362186 - 48362075
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||| |||| |||||| |||||||||||||||||||| ||| ||    
T  48362186 tgtgagagttaacttaaaatcaggttctgtagaaatcgtggcacgatggttgggcaacgtggcacgattggaagtttcagttttgaggcaagtaactaga 48362087  T
Q  238 tttttcgtggca 249  Q
    ||||||||||||    
T  48362086 tttttcgtggca 48362075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 18099708 - 18099608
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |||||    
T  18099708 ttgtgagagttaacttaaaatcaggtttctgca-aaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttgaggcaagacactg 18099610  T
Q  236 ga 237  Q
    ||    
T  18099609 ga 18099608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 18097423 - 18097331
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  18097423 ttgtgagagttaacttaaaatcaggtttctgca-aaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttgaggcaag 18097331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 26720266 - 26720367
Alignment:
Q  136 tttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| |||  |||||||||||||  ||||||||||  |||||    
T  26720266 tttgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatggctgagcaacgtggcaggattggaggtttcaagtttgaggcaaagcactg 26720365  T
Q  236 ga 237  Q
    ||    
T  26720366 ga 26720367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 10956564 - 10956465
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||||||  |||||| ||||||||||| |||||||  || | | |||| ||||||||||||||||||| |||||| ||||||    
T  10956564 ttgtgagagttaacttaaaatcaggatctgcaggaatcgtggcac-atggctggacatcatggcacgattggaggtttcagttttggggcaaggcactgg 10956466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 11162891 - 11162990
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcactgg 236  Q
    |||||||||||||||||||||| |  |||||| |||||||||||||| |||| ||||||| |||| | |||||||||||| |||||||||||| ||||||    
T  11162891 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactgg 11162989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 5191374 - 5191464
Alignment:
Q  139 gtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    |||||||||||||||||||||| |  |||||||| |||||||||||| |||| ||| ||| |||| ||||||||||||||||||||||||||    
T  5191374 gtgagagttaacttaaaatcagatttctgcagaa-tcgtggcacgattgctgggcatcgtggcacgattggaggtttcagttttgaggcaag 5191464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 24176999 - 24177098
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||| || ||| ||||||||||||||| | || | ||||||| |||| |||||  ||||||||| ||| |||||||||||||    
T  24176999 tgtgagagttaacttaaaatcaagttctggagaaatcgtggcacgtttgcagggcaacgtggcacgattggttgtttcagttctgaagcaagtcactgga 24177098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 1321161 - 1321251
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaa 228  Q
    |||||||||||||||||||||| |  |||||| |||||||||||||| |||| ||||||| |||| ||| |||||||||  ||||||||||    
T  1321161 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggcacgattagaggtttcaagtttgaggcaa 1321251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 5523153 - 5523061
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    ||||||||||||||||||||||| |  ||| || |||||||||| ||| |||| ||||| | |||| ||||| ||||||||||||||||||||    
T  5523153 ttgtgagagttaacttaaaatcaagatctggaggaatcgtggcaagattgctgggcaacatggcacgattggtggtttcagttttgaggcaag 5523061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 22114843 - 22114743
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcact 234  Q
    ||||||||||||||||||||||||| | ||| || |||||||||||||||| || ||||||| |||| | |||||||||||| |||||||||||| ||||    
T  22114843 ttgtgagagttaacttaaaatcaggtttctgtag-aatcgtggcacgatggttgggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcact 22114746  T
Q  235 gga 237  Q
    |||    
T  22114745 gga 22114743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 7606964 - 7606881
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||| | |||||| ||||||| ||||||||||| ||||||| |||| | ||||||||||||||||    
T  7606964 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtgacacgatggctgggcaacgtggcacga-tggaggtttcagtttt 7606881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 11170144 - 11170244
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcactg 235  Q
    ||||||||||||||||||||||| |  |||||| |||||||||||| | |||| ||||||| |||| | |||||||||| | |||||||||||| |||||    
T  11170144 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacggttgctgggcaacgtggcacga-tggaggtttcggtttttgaggcaaggcactg 11170242  T
Q  236 ga 237  Q
    ||    
T  11170243 ga 11170244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 38210066 - 38210149
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| ||||| ||||||| |||| | ||||||||| ||||||    
T  38210066 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttttagtttt 38210149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 24979514 - 24979562
Alignment:
Q  204 attggaggtttcagttttgaggcaagtcactggatttttcgtggcacga 252  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||||||    
T  24979514 attggaggtttcagctttgtggcaagtcactgaatttttcgtggcacga 24979562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 50493676 - 50493758
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||| |||| ||||||| |||| | ||||||||| ||||||    
T  50493676 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatagctgggcaacgtggcacga-tggaggttttagtttt 50493758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 53896754 - 53896672
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||| |||| ||||||| |||| | ||||||||| ||||||    
T  53896754 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgattgctgggcaacgtggcacga-tggaggttttagtttt 53896672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 45882659 - 45882707
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 186  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  45882659 tgtgagagttaacttaaaatcaggatctgcaaaaatcgtgccacgatgg 45882707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 10192496 - 10192431
Alignment:
Q  171 aatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||| ||   ||||||| |||| || ||||||||||||||||||||||| |||||||    
T  10192496 aatcgtggcacgatcgcaaggcaacgtggcacgat-ggaggtttcagttttgaggcaaggcactgga 10192431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 18162405 - 18162451
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgat 184  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||||||    
T  18162405 tgtgagagttaacttaaaatcaggatctgcataaatcgtgccacgat 18162451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 25388617 - 25388666
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatgg 186  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  25388617 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 25388666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 6064007 - 6063924
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    |||||||| |||||||||||||||| |  ||||| |||||||||||||||||   ||||||| |||||| ||||||||| ||||||    
T  6064007 ttgtgagaattaacttaaaatcaggtttatgcag-aatcgtggcacgatggcaaggcaacgtggcacaa-tggaggttttagtttt 6063924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 4423835 - 4423934
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||| |  |||||| ||||||||||| || |||| ||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  4423835 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacaattgctgggcaacgtggcacaattggaggtttcagttttaaggcaaggcactgga 4423934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 12517565 - 12517475
Alignment:
Q  138 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaa 228  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||   ||||||| |||| |||||||||||||||||||||||||    
T  12517565 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatggcaaggcaacgtggcacgattggaggtttcagttttgaggcaa 12517475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 15072505 - 15072602
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcact 234  Q
    |||||||||||||||||||||||| | |||||| ||||||| ||||||||||| |||||||  ||| |||||||||||||||||||| ||||| ||||    
T  15072505 ttgtgagagttaacttaaaatcagattctgcaggaatcgtgacacgatggctgggcaacgtgacacgattggaggtttcagttttgaagcaagccact 15072602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 15067774 - 15067876
Alignment:
Q  135 ttttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcact 234  Q
    ||||||||| |||||||||||||||| |  ||||| |||||||||| |||||||| ||||| | |||| |||||||||||||||||||| ||||| ||||    
T  15067774 ttttgtgagtgttaacttaaaatcagattttgcaggaatcgtggcaagatggctgggcaacatggcacgattggaggtttcagttttgaagcaagccact 15067873  T
Q  235 gga 237  Q
    |||    
T  15067874 gga 15067876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 28252122 - 28252027
Alignment:
Q  142 agagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||  ||||||| | || |||||||||||||  ||||||||||  |||||||    
T  28252122 agagttaacttaaaatcaggatctgcaggaatcgtggcacgatggctaggcaacgtggtacgattggaggtttcaagtttgaggcaaagcactgga 28252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 27826780 - 27826864
Alignment:
Q  136 tttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||| |||| ||||||| |||| | ||||||||||| ||||    
T  27826780 tttgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgattgctgggcaacgtggcacga-tggaggtttcattttt 27826864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 27829092 - 27829192
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttca-gttttgaggcaagtcactg 235  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||| |||| ||||||| |||| | |||||||||||  |||||||||||  |||||    
T  27829092 ttgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgattgctgggcaacgtggcacga-tggaggtttcattttttgaggcaaaacactg 27829190  T
Q  236 ga 237  Q
    ||    
T  27829191 ga 27829192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 44720616 - 44720709
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc--ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    ||||||||||||||||||||||||||   |||||||| |||||||| ||| |||| |||  || ||||  |||||||||||||||||||||||||    
T  44720616 ttgtgagagttaacttaaaatcaggttttctgcagaa-tcgtggcatgattgctgggcattgtggcacgtttggaggtttcagttttgaggcaag 44720709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 14807552 - 14807647
Alignment:
Q  142 agagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    |||||||||||||||||||||  |||||||| |||||||| ||||| || |||||||  ||| |||||||||||||  ||||||||||  |||||||    
T  14807552 agagttaacttaaaatcaggtttctgcagaa-tcgtggcatgatggttgggcaacgtgacacgattggaggtttcaagtttgaggcaaagcactgga 14807647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 18812667 - 18812767
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcag-ttttgaggcaagtcact 234  Q
    ||||||||||||||||||||||||| | ||| || ||||||||||||| ||||| ||||||| |||| | ||||||||| || |||| ||||||| ||||    
T  18812667 ttgtgagagttaacttaaaatcaggtttctgaag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttttagttttttaggcaaggcact 18812764  T
Q  235 gga 237  Q
    |||    
T  18812765 gga 18812767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 18810483 - 18810547
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcac 202  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||| ||||| ||||||| ||||    
T  18810483 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcac 18810547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 43079346 - 43079429
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagtttt 221  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||| |||   ||||||| |||| | ||||||||| ||||||    
T  43079346 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggcaaggcaacgtggcacga-tggaggttttagtttt 43079429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 14768 - 14882
Alignment:
Q  139 gtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactgga 237  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||| |  | ||||||| | || || ||| ||||||||| |||||||||||||||||    
T  14768 gtgagagttaacttaaaatcaggattctgcaggaatcgtggcacgattgaagggcaacgtggaacgatgggaagtttcagttatgaggcaagtcactgga 14867  T
Q  238 tttttcgtggcacga 252  Q
      |||||||||||||    
T  14868 aatttcgtggcacga 14882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 2628 - 2720
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaag 229  Q
    ||||||||||||||||||||||| |  |||||| ||| ||| |||||| |||  ||||||| |||| ||||||||||||||||||||||||||    
T  2628 ttgtgagagttaacttaaaatcaagatctgcaggaattgtgacacgattgctaggcaacgtggcacgattggaggtttcagttttgaggcaag 2720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 69834 - 69734
Alignment:
Q  137 ttgtgagagttaacttaaaatcaggtc-ctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    |||| ||||||||||||||||||| |  |||||||| ||||||||||||||||  ||||||| |||| |||||||||||||  ||||||||||  |||||    
T  69834 ttgtaagagttaacttaaaatcagatttctgcagaa-tcgtggcacgatggctaggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 69736  T
Q  236 ga 237  Q
    ||    
T  69735 ga 69734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 73545 - 73445
Alignment:
Q  137 ttgtgagagttaacttaaaatcag-gtcctgcagaaatcgtggcacgatggctgagcaacgtagcacaattggaggtttcagttttgaggcaagtcactg 235  Q
    |||| |||||||||||||||||||  |  ||||| ||||||||||||||||||  ||||||| |||| |||||||||||||  ||||||||||  |||||    
T  73545 ttgtaagagttaacttaaaatcagatttatgcag-aatcgtggcacgatggctaggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 73447  T
Q  236 ga 237  Q
    ||    
T  73446 ga 73445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 28940 - 29005
Alignment:
Q  137 ttgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatggctgagcaacgtagcac 202  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||| ||||    
T  28940 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcac 29005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 21911 - 21939
Alignment:
Q  134 attttgtgagagttaacttaaaatcaggt 162  Q
    |||||||||||||||||||||||||||||    
T  21911 attttgtgagagttaacttaaaatcaggt 21939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 13054 - 13007
Alignment:
Q  138 tgtgagagttaacttaaaatcagg-tcctgcagaaatcgtggcacgatg 185  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||||    
T  13054 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatg 13007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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