View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9815_low_4 (Length: 361)
Name: NF9815_low_4
Description: NF9815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9815_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 13879089 - 13878949
Alignment:
| Q |
219 |
tctaatggatttatgtttgtgaaattgatttgatcagagtgcccatctcaatgcacaagaagatgtggacagacacaatatcacaagccatgcatgttct |
318 |
Q |
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| T |
13879089 |
tctaatggatttatgtttgtgaaattgatttgatcagagtgtccatctcaatgcacaagaagatgtggacagacacaatatcacaagccatgcatgttct |
13878990 |
T |
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| Q |
319 |
tctgtcaaaaatgttgtgccaaatgtctctgtgctcctcct |
359 |
Q |
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| T |
13878989 |
tctgtcaaaaatgttgtgccaaatgtctctgtgttcctcct |
13878949 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 2638060 - 2638142
Alignment:
| Q |
253 |
cagagtgcccatctcaatgcacaagaagatgtggacagacacaatatcacaagccatgcatgttcttctgtcaaaaatgttgt |
335 |
Q |
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| T |
2638060 |
cagaatgcccatcccaatgctcaaggagatgtggacagacacaataccacaaaccttgcatgtttttctgtcagaagtgttgt |
2638142 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 3729868 - 3729952
Alignment:
| Q |
251 |
atcagagtgcccatctcaatgcacaagaagatgtggacagacacaatatcacaagccatgcatgttcttctgtcaaaaatgttgt |
335 |
Q |
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| T |
3729868 |
atcagaatgcccatctcaatgctcaaggagatgcaaaaatactcaatatcacaagccatgcatgttcttttgtcaaaagtgttgt |
3729952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 33426704 - 33426651
Alignment:
| Q |
306 |
ccatgcatgttcttctgtcaaaaatgttgtgccaaatgtctctgtgctcctcct |
359 |
Q |
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| T |
33426704 |
ccatgcatgtttttctgccaaaaatgttgtgctacatgtctttgtgttcctcct |
33426651 |
T |
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