View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9815_low_8 (Length: 302)
Name: NF9815_low_8
Description: NF9815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9815_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 26791276 - 26790991
Alignment:
| Q |
7 |
aaagctgccatcatctcatcaggactatctctcaaagacctcacaccaaatgtgtcctgcgtatttaaagcaaatgatacttaggatttctcctagttga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791276 |
aaagctgccatcatctcatcaggactatctctcaaagacctcacaccaaacgtgtcctgcgtatttaaagcaaatgatacttaggatttctcctagttga |
26791177 |
T |
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| Q |
107 |
tgatgatatttaaaagacaaaatagaaatataaattgatttactgagaaaaagtcagtatcgttcattgcccagaaaaatatgactgtcattagtgccat |
206 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791176 |
tgatgatacttaaaagacaaaatagaaatataaattgatttaccgagaaaaagtcagtatcgttcattgcccagaaaaatatgactgtcattagtgccat |
26791077 |
T |
|
| Q |
207 |
gtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcaggcaatggagatggtttaactctatcctttg |
292 |
Q |
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| T |
26791076 |
gtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcaggcaatggagatggtttaactctatcctttg |
26790991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 1463524 - 1463233
Alignment:
| Q |
9 |
agctgccatcatctcatcaggactatctctcaaagacctcacaccaaatgtgtcctgcg---tatttaaagcaaatgatacttaggatttctcctagttg |
105 |
Q |
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|||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||| | |||||||| || | ||||| |||||||||||||| |
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| T |
1463524 |
agctgccatcatctcagcaggattatttctcaaagacctcacaccaaacttgtcctgcaacatgtttaaagcttatagtgcttagtatttctcctagttg |
1463425 |
T |
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| Q |
106 |
atgatgatatttaaaagacaaaatagaaa----tataaattga-tttactgagaaaaagtcagtatcgttcattgcccagaaaaatatgactgtcattag |
200 |
Q |
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| T |
1463424 |
gtgatgatatttaaatgaaaaaatataaacatatataaatttaatttaccgagaaaaagtcagaatcatgcatggcccagaaaaatatgactgtcattag |
1463325 |
T |
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| Q |
201 |
tgccatgtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcaggcaatggagatggtttaactctatcctttg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
1463324 |
ggccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttg |
1463233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 1496292 - 1496421
Alignment:
| Q |
163 |
gtatcgttcattgcccagaaaaatatgactgtcattagtgccatgtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcag |
262 |
Q |
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||||| ||||| ||||||||||||| ||||||||||||||||||||||| || || |||| ||||||||||||||||||| | |||||||||||||||| |
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| T |
1496292 |
gtatctttcatcgcccagaaaaatactactgtcattagtgccatgtaacttcctaggacaacaccagtagcaaatatctccctcagtttccaactatcag |
1496391 |
T |
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| Q |
263 |
gcaatggagatggtttaactctatcctttg |
292 |
Q |
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| | |||||||||||| ||||||||||||| |
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| T |
1496392 |
gtagtggagatggtttcactctatcctttg |
1496421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 50276884 - 50276771
Alignment:
| Q |
177 |
ccagaaaaatatgactgtcattagtgccatgtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcaggcaatggagatggt |
276 |
Q |
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||||||||| | |||||||||||||||||||| || || ||||||| |||||||||||||||||| | ||||||||||| || |||| |||||||||| |
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| T |
50276884 |
ccagaaaaacaccactgtcattagtgccatgtagctacctagcacaacaccagtagcaaatatctctctcagtttccaactgtctggcattggagatggt |
50276785 |
T |
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| Q |
277 |
ttaactctatcctt |
290 |
Q |
| |
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|| ||||||||||| |
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| T |
50276784 |
tttactctatcctt |
50276771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 53074797 - 53074903
Alignment:
| Q |
169 |
ttcattgcccagaaaaatatgactgtcattagtgccatgtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcaggcaatg |
268 |
Q |
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||||||||||| || ||||| || ||||| ||||| | |||| ||||| ||||| |||||||||||||| || || | |||||| ||||||||||||| |
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| T |
53074797 |
ttcattgcccaaaagaatatcacagtcatcagtgctaaataacctccaagaacaattccagtagcaaatatttctttcaatttccagctatcaggcaatg |
53074896 |
T |
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| Q |
269 |
gagatgg |
275 |
Q |
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||||||| |
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| T |
53074897 |
gagatgg |
53074903 |
T |
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