View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9816_2 (Length: 318)
Name: NF9816_2
Description: NF9816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9816_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 35409854 - 35410170
Alignment:
| Q |
1 |
ggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggattggagttcattgtcagaagaaa |
100 |
Q |
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| T |
35409854 |
ggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaagaaa |
35409953 |
T |
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| Q |
101 |
cggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagtccatatggggagtccatcagccgcataaggataatcttc |
200 |
Q |
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| T |
35409954 |
tggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagaccatatgaggagtccatcagccgcataaggataatcttc |
35410053 |
T |
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| Q |
201 |
aataagtagtctaatgccatgtggctgagtggcatctggaaccgccaaacctctgnnnnnnnngaaagaataaatagttagatcttatcttcttcactta |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35410054 |
aataagtagtctaatgccatgtggccgagtggcatctggaaccgccaaacctctg-aaaaaaagaaagaataaatagttagatcttatcttcttcactta |
35410152 |
T |
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| Q |
301 |
gtgaaagaacaaatgaaa |
318 |
Q |
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|||||||||||||||||| |
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| T |
35410153 |
gtgaaagaacaaatgaaa |
35410170 |
T |
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