View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9817_high_13 (Length: 226)

Name: NF9817_high_13
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9817_high_13
NF9817_high_13
[»] chr8 (8 HSPs)
chr8 (18-195)||(895776-895962)
chr8 (165-206)||(41955927-41955967)
chr8 (163-206)||(43066627-43066669)
chr8 (165-206)||(3155841-3155881)
chr8 (164-209)||(5740804-5740848)
chr8 (166-207)||(9048348-9048388)
chr8 (163-195)||(26629153-26629185)
chr8 (163-195)||(42716316-42716348)
[»] chr2 (3 HSPs)
chr2 (163-206)||(18737907-18737949)
chr2 (164-206)||(1052529-1052570)
chr2 (167-207)||(41868401-41868441)
[»] chr7 (4 HSPs)
chr7 (165-211)||(23848087-23848132)
chr7 (164-209)||(6822552-6822596)
chr7 (165-205)||(40949934-40949974)
chr7 (163-195)||(43025805-43025837)
[»] chr6 (5 HSPs)
chr6 (165-207)||(8778904-8778945)
chr6 (164-206)||(9188977-9189018)
chr6 (165-207)||(26391317-26391358)
chr6 (164-209)||(31517199-31517243)
chr6 (163-195)||(31883347-31883379)
[»] chr5 (3 HSPs)
chr5 (164-193)||(33743378-33743407)
chr5 (166-206)||(1293119-1293158)
chr5 (167-195)||(15531995-15532023)
[»] chr3 (1 HSPs)
chr3 (165-206)||(37035613-37035654)
[»] chr4 (1 HSPs)
chr4 (166-206)||(34027894-34027934)
[»] chr1 (3 HSPs)
chr1 (165-205)||(14983782-14983821)
chr1 (163-195)||(24806265-24806297)
chr1 (166-206)||(25989017-25989056)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 895776 - 895962
Alignment:
Q  18 actagtacatcatcatttatgttacg--------ttatcttttaatgtttctatggtcatgtttctttgatgccggatcagtacacaaagcattcaatgt 109  Q
    ||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  895776 actagtacatcatcatttatgttacgttaatacgttatcttttcatgtttctatggtcatgtttctttgatgccggatcagtacaaaaagcattcaatgt 895875  T
Q  110 acataataataatgtaccaaaagtaaggtgtt-gagaatttttagatgataatgataagagaaatgatatttgtataaccacttttt 195  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  895876 acataataataatgtaccaaaagttaggtgttagagaatttttagatgataatgataaaagaaatgatatttgtacaaccacttttt 895962  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 41955927 - 41955967
Alignment:
Q  165 aagagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  41955927 aagagaaatgatatttgtataacca-ttttttaacaactttt 41955967  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 43066669 - 43066627
Alignment:
Q  163 ataagagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||    
T  43066669 ataagagaaatgatatttgtacaaccact-ttttaacaactttt 43066627  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 3155841 - 3155881
Alignment:
Q  165 aagagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  3155841 aagagaaatgatatttgtacaaccac-tttttaacaactttt 3155881  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 5740848 - 5740804
Alignment:
Q  164 taagagaaatgatatttgtataaccacttttttaacaactttttct 209  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  5740848 taagagaaatgatatttgtacaaccact-ttttgacaactttttct 5740804  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 9048388 - 9048348
Alignment:
Q  166 agagaaatgatatttgtataaccacttttttaacaacttttt 207  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  9048388 agagaaatgatatttgtataacca-ttttctaacaacttttt 9048348  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 26629185 - 26629153
Alignment:
Q  163 ataagagaaatgatatttgtataaccacttttt 195  Q
    ||||||||||||||||||||| |||||||||||    
T  26629185 ataagagaaatgatatttgtacaaccacttttt 26629153  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 42716316 - 42716348
Alignment:
Q  163 ataagagaaatgatatttgtataaccacttttt 195  Q
    ||||||||||||||||||||| |||||||||||    
T  42716316 ataagagaaatgatatttgtacaaccacttttt 42716348  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 18737949 - 18737907
Alignment:
Q  163 ataagagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  18737949 ataagagaaatgatatttgtatatcca-ttttttaacaactttt 18737907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 1052570 - 1052529
Alignment:
Q  164 taagagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  1052570 taagagaaatgatatttgtacaacca-ttttttaacaactttt 1052529  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 41868441 - 41868401
Alignment:
Q  167 gagaaatgatatttgtataaccacttttttaacaacttttt 207  Q
    ||||||||||||||||| || || |||||||||||||||||    
T  41868441 gagaaatgatatttgtacaatcatttttttaacaacttttt 41868401  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 23848087 - 23848132
Alignment:
Q  165 aagagaaatgatatttgtataaccacttttttaacaactttttctat 211  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||    
T  23848087 aagagaaatgatatttgtataatca-ttttttaacaactttctctat 23848132  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 6822596 - 6822552
Alignment:
Q  164 taagagaaatgatatttgtataaccacttttttaacaactttttct 209  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||    
T  6822596 taagagaaatgatatttgtacaacca-ttttctaacaactttttct 6822552  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 40949974 - 40949934
Alignment:
Q  165 aagagaaatgatatttgtataaccacttttttaacaacttt 205  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  40949974 aagagaaatgatatttgtataactatttttttgacaacttt 40949934  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 43025805 - 43025837
Alignment:
Q  163 ataagagaaatgatatttgtataaccacttttt 195  Q
    ||||||||||||||||||||| |||||||||||    
T  43025805 ataagagaaatgatatttgtacaaccacttttt 43025837  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 8778945 - 8778904
Alignment:
Q  165 aagagaaatgatatttgtataaccacttttttaacaacttttt 207  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  8778945 aagagaaatgatatttgtacaacca-ttttttaacaacttttt 8778904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 9189018 - 9188977
Alignment:
Q  164 taagagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  9189018 taagagaaatgatatttgtacaacca-ttttttaacaactttt 9188977  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 26391358 - 26391317
Alignment:
Q  165 aagagaaatgatatttgtataaccacttttttaacaacttttt 207  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  26391358 aagagaaatgatatttgtacaacca-ttttttaacaacttttt 26391317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 31517243 - 31517199
Alignment:
Q  164 taagagaaatgatatttgtataaccacttttttaacaactttttct 209  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  31517243 taagagaaatgatatttgtacaaccact-ttttgacaactttttct 31517199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 31883379 - 31883347
Alignment:
Q  163 ataagagaaatgatatttgtataaccacttttt 195  Q
    ||||||||||||||||||||| |||||||||||    
T  31883379 ataagagaaatgatatttgtacaaccacttttt 31883347  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 33743407 - 33743378
Alignment:
Q  164 taagagaaatgatatttgtataaccacttt 193  Q
    ||||||||||||||||||||||||||||||    
T  33743407 taagagaaatgatatttgtataaccacttt 33743378  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 1293158 - 1293119
Alignment:
Q  166 agagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  1293158 agagaaatgatatttgtacaacca-ttttttaacaactttt 1293119  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 15532023 - 15531995
Alignment:
Q  167 gagaaatgatatttgtataaccacttttt 195  Q
    |||||||||||||||||||||||||||||    
T  15532023 gagaaatgatatttgtataaccacttttt 15531995  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 37035613 - 37035654
Alignment:
Q  165 aagagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    |||| |||||||||||||||||||| |||||| |||||||||    
T  37035613 aagataaatgatatttgtataaccatttttttgacaactttt 37035654  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 34027894 - 34027934
Alignment:
Q  166 agagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    |||||||||||||||||| ||| | ||||||||||||||||    
T  34027894 agagaaatgatatttgtacaacaatttttttaacaactttt 34027934  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 14983782 - 14983821
Alignment:
Q  165 aagagaaatgatatttgtataaccacttttttaacaacttt 205  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  14983782 aagagaaatgatatttgtacaaccac-tttttaacaacttt 14983821  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 24806297 - 24806265
Alignment:
Q  163 ataagagaaatgatatttgtataaccacttttt 195  Q
    ||||||||||||||||||| |||||||||||||    
T  24806297 ataagagaaatgatatttgaataaccacttttt 24806265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 25989056 - 25989017
Alignment:
Q  166 agagaaatgatatttgtataaccacttttttaacaactttt 206  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  25989056 agagaaatgatatttgtacaacca-ttttttaacaactttt 25989017  T

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