View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9817_high_15 (Length: 220)
Name: NF9817_high_15
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 1962683 - 1962868
Alignment:
| Q |
18 |
ctaatgacctaccacaaggggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaacttt |
117 |
Q |
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| T |
1962683 |
ctaatgacctaccacaaggggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaacttt |
1962782 |
T |
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| Q |
118 |
aaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
203 |
Q |
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| T |
1962783 |
aagggcaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
1962868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 2015744 - 2015561
Alignment:
| Q |
20 |
aatgacctaccacaaggggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaa |
119 |
Q |
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| T |
2015744 |
aatgacctaccacaagggattgctttagtacttcaacttcagctcacactgactcactcactgccatctatacatcaggccttgaagtccttaactttaa |
2015645 |
T |
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| Q |
120 |
ggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
203 |
Q |
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| T |
2015644 |
agacaccctttgttgccttggtggttgatatatcagcaatggatgcactggattttgctaaggaattcaacttgttgtcctatg |
2015561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 2019120 - 2018944
Alignment:
| Q |
27 |
taccacaaggggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaaggacacc |
126 |
Q |
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| T |
2019120 |
taccacaagggattgctttagtacttcaaattcagctcacagtaattcactcactgccatctatacatcaggccttgaagtccttaactttaaggacacc |
2019021 |
T |
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| Q |
127 |
ctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
203 |
Q |
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| T |
2019020 |
ctttgttgccttggtggttgattcattagcaatcgatgcactagattttgctaaagagttcaacatgttgtcctatg |
2018944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 2012251 - 2012163
Alignment:
| Q |
114 |
ctttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctat |
202 |
Q |
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| T |
2012251 |
ctttaaggattccccttgtggccttggtggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctat |
2012163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 5901924 - 5902047
Alignment:
| Q |
80 |
ctgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgcta |
179 |
Q |
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| T |
5901924 |
ctgccatatttacatcaggcattgaactccttaactttaaggactccccctgtggcactggtggttgattctttatctgccgaagcactagatttggcta |
5902023 |
T |
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| Q |
180 |
aggaattcaacttgttgtcctatg |
203 |
Q |
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| T |
5902024 |
aggagttcaacatgttgtcctatg |
5902047 |
T |
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