View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9817_high_2 (Length: 675)

Name: NF9817_high_2
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9817_high_2
NF9817_high_2
[»] chr7 (5 HSPs)
chr7 (20-662)||(35354507-35355149)
chr7 (344-578)||(35380837-35381071)
chr7 (20-264)||(35369652-35369896)
chr7 (20-264)||(35379011-35379255)
chr7 (347-578)||(35370278-35370509)
[»] chr4 (4 HSPs)
chr4 (20-264)||(19630480-19630724)
chr4 (20-264)||(19684073-19684317)
chr4 (346-578)||(19684483-19684715)
chr4 (346-578)||(19630111-19630344)
[»] chr8 (4 HSPs)
chr8 (144-242)||(2258460-2258558)
chr8 (139-242)||(2280450-2280553)
chr8 (467-524)||(2251396-2251453)
chr8 (467-524)||(2256744-2256801)


Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 20 - 662
Target Start/End: Original strand, 35354507 - 35355149
Alignment:
Q  20 gcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||    
T  35354507 gcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatggtgt 35354606  T
Q  120 gattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattct 219  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||    
T  35354607 gattcttacagcaatattgcatgctggaccagtggagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcactct 35354706  T
Q  220 catcaccattcttcaattgttactgagcctatcacttgtatgaacnnnnnnnnnnnnnnnnnngcatgcttgatttgtgagtgtccaaattttggtgtca 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||    
T  35354707 catcaccattcttcaattgttactgagcctatcacttgtatgaactttttttctttcatttttgcatgcttgatttgtgagtgtccaaattttggtgtca 35354806  T
Q  320 aaataacacaactttcttatgtattttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaaca 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354807 aaataacacaactttcttatgtattttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaaca 35354906  T
Q  420 ttgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttccta 519  Q
    |||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35354907 ttgttcatcaaaaaatcttctgtggctgcactatatggctatgtctttttcattgatttcatgaacaacatgggtcattgcaactttgagttcattccta 35355006  T
Q  520 agaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaatgagcttcctaatttctagtgacattcca 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  35355007 agaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaacgagcttcctaatttctagtcacattcca 35355106  T
Q  620 tatgctaattgtttattttgtccgtgatatatttccacaggtt 662  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  35355107 tatgctaattgtttattttctccgtgatatatttccacaggtt 35355149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 344 - 578
Target Start/End: Original strand, 35380837 - 35381071
Alignment:
Q  344 tttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtg 443  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  35380837 tttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtg 35380936  T
Q  444 gctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca 543  Q
    |||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35380937 gctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca 35381036  T
Q  544 ttttgaagtatctctcatacacaccatcgtaagtt 578  Q
    |||| ||||||||||||||||||||||||||||||    
T  35381037 ttttaaagtatctctcatacacaccatcgtaagtt 35381071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 35369652 - 35369896
Alignment:
Q  20 gcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgt 119  Q
    |||||||||| ||||| ||||||||||||||  |||| || ||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||    
T  35369652 gcagggatgaccaaattttgttcactgcactgttatactacataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatggtgt 35369751  T
Q  120 gattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattct 219  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  35369752 gattcttacagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattct 35369851  T
Q  220 catcaccattcttcaattgttactgagcctatcacttgtatgaac 264  Q
    || || |||||||||||||| ||||||||| ||||||||||||||    
T  35369852 caccatcattcttcaattgtcactgagcctgtcacttgtatgaac 35369896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 35379011 - 35379255
Alignment:
Q  20 gcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgt 119  Q
    |||||||||||||||| |||||||||| ||| ||||||| ||||| |||| | ||||||||||| || ||||| |||||||||||||||| |||||||||    
T  35379011 gcagggatgatcaaatgttgttcactgtactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatggtgt 35379110  T
Q  120 gattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattct 219  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  35379111 gattcttacagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattct 35379210  T
Q  220 catcaccattcttcaattgttactgagcctatcacttgtatgaac 264  Q
    || || |||||||||||||| ||||||||||||||||||||||||    
T  35379211 caccatcattcttcaattgtcactgagcctatcacttgtatgaac 35379255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 347 - 578
Target Start/End: Original strand, 35370278 - 35370509
Alignment:
Q  347 gacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggct 446  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35370278 gacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct 35370377  T
Q  447 gcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattt 546  Q
    ||||||| ||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||   |    
T  35370378 gcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaat 35370477  T
Q  547 tgaagtatctctcatacacaccatcgtaagtt 578  Q
    ||||||||||||| ||||||||||||||||||    
T  35370478 tgaagtatctctcttacacaccatcgtaagtt 35370509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 6e-76; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 19630724 - 19630480
Alignment:
Q  20 gcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgt 119  Q
    |||||||||||||||||||||| |||||||||   |  ||||||  |||||  ||||||||||| ||  |||| ||||||||||||||||||||||||||    
T  19630724 gcagggatgatcaaatattgttgactgcactaaccttctatatactatacacaatatttcctatggctgctaacttaccatggtggagaacagatggtgt 19630625  T
Q  120 gattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattct 219  Q
    | |||||||||   | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  19630624 ggttcttacagctctcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatactctcgttaccattct 19630525  T
Q  220 catcaccattcttcaattgttactgagcctatcacttgtatgaac 264  Q
    ||||| |||||||||||||| || |||||||||||||||||||||    
T  19630524 catcatcattcttcaattgtcaccgagcctatcacttgtatgaac 19630480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 19684073 - 19684317
Alignment:
Q  20 gcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgt 119  Q
    ||||||||||||||||||||||||||||| || | | |||||||   |||| |||||||||||| ||  | || ||||||||||||||||||||||||||    
T  19684073 gcagggatgatcaaatattgttcactgcattaatgttttatatactttacacgatatttcctatggctgccaacttaccatggtggagaacagatggtgt 19684172  T
Q  120 gattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattct 219  Q
    |||||||||||  || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  19684173 gattcttacagctatcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatattctcgttaccattct 19684272  T
Q  220 catcaccattcttcaattgttactgagcctatcacttgtatgaac 264  Q
    || || |||||||||||||| ||||| ||||||||| ||||||||    
T  19684273 caccatcattcttcaattgtcactgaacctatcactggtatgaac 19684317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 346 - 578
Target Start/End: Original strand, 19684483 - 19684715
Alignment:
Q  346 tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggc 445  Q
    ||||||| |||||||| |||||||| |||   ||| ||||||| |||||||||  ||||||||||||||||||||||||||| ||||||||   |||||     
T  19684483 tgacagcggtgacacatccatttgctgagatgttggcatatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggt 19684582  T
Q  446 tgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccatt 545  Q
    |||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||       
T  19684583 tgcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccccaa 19684682  T
Q  546 ttgaagtatctctcatacacaccatcgtaagtt 578  Q
    |||||||||||| ||||||||||||||||||||    
T  19684683 ttgaagtatctcacatacacaccatcgtaagtt 19684715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 346 - 578
Target Start/End: Complemental strand, 19630344 - 19630111
Alignment:
Q  346 tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttga-caacattgttcatcaaaaaatcttctgtgg 444  Q
    |||||||||||| |||||||||||| |||   ||| ||||||| |||||||||  ||| ||||| |||| ||||| ||||| | |||||||| ||| | |    
T  19630344 tgacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattg 19630245  T
Q  445 ctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccat 544  Q
    ||||  | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |    
T  19630244 ctgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttcccct 19630145  T
Q  545 tttgaagtatctctcatacacaccatcgtaagtt 578  Q
     |||||||||||||| ||||||||||||||||||    
T  19630144 attgaagtatctctcgtacacaccatcgtaagtt 19630111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 2258558 - 2258460
Alignment:
Q  144 tggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttac 242  Q
    |||||||||||||||| | ||||||||| |||| |||||||||||||| ||||  || || ||| | |||||||||||||| |||||||| ||||||||    
T  2258558 tggaccagtggagtttctttactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac 2258460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 2280553 - 2280450
Alignment:
Q  139 catgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattg 238  Q
    ||||||||| |||| || ||| | || |||||| |||| |||||||||||||| ||||  || || ||| | |||||||||||||| |||||||| ||||    
T  2280553 catgctggagcagttgaatttctttattattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattg 2280454  T
Q  239 ttac 242  Q
    ||||    
T  2280453 ttac 2280450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
Q  467 ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa 524  Q
    |||||||||||||||||| ||  ||||||| || || ||||||||| |||||||||||    
T  2251396 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa 2251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
Q  467 ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa 524  Q
    |||||||||||||||||| ||  ||||||| || || ||||||||| |||||||||||    
T  2256801 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa 2256744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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