View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9817_high_6 (Length: 416)
Name: NF9817_high_6
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 35394059 - 35393662
Alignment:
| Q |
17 |
caaactcgtggtagattgtgnnnnnnnnaatcgggtatctctgtgtgtatcggtagagattaatctctcgagtcagataggaccgcaataagtgacatag |
116 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
35394059 |
caaactcgtggtagattgtgttttttttaatcgggtatttctgtgtgtatcggtagagattaatctctcgagtcagataggactgcaatgagtgatatag |
35393960 |
T |
|
| Q |
117 |
ttctaacattgttggattttcaaaactggattcaaactcgctcggaacaatctggttaagctacaatcactttcaagtgctattaggattctagatggta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35393959 |
ttctaacattgttggattttcaaaactggattcaaacttgctcggaacaatctggttaagctgcaatcactttcaagtgctattaggattctagatggta |
35393860 |
T |
|
| Q |
217 |
ggttgtgttatttgttgaagtttaaagtgtaatttctgtcaaaaatacaataatactataattttttactcatggatatgccaaccgagttggaaaacga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35393859 |
ggttgtgttatttgttgaagtttaaagtgtaatttctgtcaaaattacaataatactataattttttactcatggatatgccaaccgagttggaaaacga |
35393760 |
T |
|
| Q |
317 |
atttcttgcagtgacctaaacaagacactgtcacgtcgacattgacagctatttaaggaaattatatcattaaatgtagttgcgtgtgttggtctctg |
414 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35393759 |
atttcttatagtgacctaaacaagacactgtcacgtcgacattgacaactatttaaggaaattatatcattaaatgtagttgcgtgtgttggtgtctg |
35393662 |
T |
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