View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9817_low_1 (Length: 923)
Name: NF9817_low_1
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 791; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 21 - 914
Target Start/End: Original strand, 5548580 - 5549473
Alignment:
| Q |
21 |
ggttttctgaaaaagggtcaattgtgattgtgatgtggatgattatgtgattgttagggttgccccacatgnnnnnnnatgtcaccatgattttaaggtc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5548580 |
ggttttctgaaaaagggtcaattgtgattgtgatgtggatgattatgtgattgttagggttgccccacatgtttttttatgtcaccatgattttaaggtc |
5548679 |
T |
|
| Q |
121 |
agggttttaaatagcggtcgtgccacaattttttatattgcggagaattgtgaaatgtgattgaaggtcgagttgcggattctgcaagataataaattgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5548680 |
agggttttaaatagcggtcgtgccacaattttttatattgcggagaattgtgaaatgtgattgaaggtcgagttgcggattctgcaagataataaattgt |
5548779 |
T |
|
| Q |
221 |
cggtgcatgtttggattgatggtgaaatgacaaaatcatggtgaatcgccttgattttggctaaagctacacttttgagcttcccaaaatcacattgtca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5548780 |
cggtgcatgtttggattgatggtgaaatgacaaaatcacggtgaatcgccttgattttggctaaagctacacttttgagcttcccaaaatcacattgtca |
5548879 |
T |
|
| Q |
321 |
ctatgattttgcagaactcaccgtcaatccaaacatatgcattatgttgcagcccagattgcggttgaacctttattttaaaccctgcctcgtaaggcca |
420 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5548880 |
ctatgattttgcagaactcaccctcaatccaaacatatgcattatgttgcagcccagattgcggttgaacctttattttaaaccctgcctcgtaaggcca |
5548979 |
T |
|
| Q |
421 |
ccgagattggagggctttattagtagtgtttactggcaattctatgttaatattaaggatcatgaacgtgactgaaccgcgaccttaactgcgatttaaa |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5548980 |
ccgagattggagggctttattagtagtgtttactggcaattctatgttaatattaaggatcatgaacgtgactgaaccgcgaccttaactgcgatttaaa |
5549079 |
T |
|
| Q |
521 |
accttggtggtgatttttatgcaaatttggatatttttctttttattagattaggagtaaacatggtgtttggcttaccatgttcaannnnnnnnnnnnn |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5549080 |
accttggtggtgatttttatgcaaatttggatatttttctttttattagattaggagtaaacatggtgtttggcttaccatgttcaattttttatttttt |
5549179 |
T |
|
| Q |
621 |
ncttgcttgtttacnnnnnnnnttgcattgaaattgattattctgattatttcgtttaatcacaatttgtcggtgttctttctttcagaagcttatgatc |
720 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5549180 |
tcttgcttgtttacaaaaaaaattgcattgaaattgattattctgattatttcgtttaatcacaatttgtcggtgttctttctttcagaagcttatgatc |
5549279 |
T |
|
| Q |
721 |
cacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatggttatgttgtgagtacattcttttagtatatcataccgat |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5549280 |
cacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatggttatgttgtgagtacattcttttagtatatcataccgat |
5549379 |
T |
|
| Q |
821 |
taatattagaaaaagttcatcgattttcaatttaacggaacacatttttcatgatgaagctgctatactactgatgcttacttattttgatgtc |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5549380 |
taatattagaaaaagttcatcgattttcaatttaatggaacacatttttcatgacgaagctgctatactactgatgcttacttattttgatgtc |
5549473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 683 - 799
Target Start/End: Complemental strand, 5543036 - 5542920
Alignment:
| Q |
683 |
caatttgtcggtgttctttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatggt |
782 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||||||| ||||||||| |||| ||||||||||| |||||| |||| ||||| |||||| |||||||| |
|
|
| T |
5543036 |
caatttgtctatgttttttctttcggaagcttatgatccgcttgacccacatggaaatatcacaatcaaatggaatattataagttggacacctgatggt |
5542937 |
T |
|
| Q |
783 |
tatgttgtgagtacatt |
799 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5542936 |
tatgttgtgagtacatt |
5542920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 700 - 802
Target Start/End: Complemental strand, 45211022 - 45210920
Alignment:
| Q |
700 |
ttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatggttatgttgtgagtacatt |
799 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| | |||||| |||| |||| ||||||||||||||| |||| |
|
|
| T |
45211022 |
ttctttcagaagcttatgatccacttgatccaaacgggaatatcacaataacatgggacgttgtaagcttgacatctgacggttatgttgtgagtgcatt |
45210923 |
T |
|
| Q |
800 |
ctt |
802 |
Q |
| |
|
||| |
|
|
| T |
45210922 |
ctt |
45210920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 805
Target Start/End: Complemental strand, 24488220 - 24488113
Alignment:
| Q |
700 |
ttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatg--gttatgttgtgagtaca |
797 |
Q |
| |
|
|||||||| ||||||||| || |||||| |||||| ||||||||||| |||||||||| ||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
24488220 |
ttctttcacaagcttatgttcaacttgaaacaaatgaaaatatcacaatctaatgggatattataagcttgacaattgatgattttatgttgtgagtaca |
24488121 |
T |
|
| Q |
798 |
ttctttta |
805 |
Q |
| |
|
||| |||| |
|
|
| T |
24488120 |
ttcattta |
24488113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 6360408 - 6360481
Alignment:
| Q |
284 |
aagctacacttttgagcttcccaaaatcacattgtcactatgattttgcagaactcaccgtcaatccaaacata |
357 |
Q |
| |
|
|||||||||||| ||||||| || |||||| || || | |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
6360408 |
aagctacactttggagcttcacactatcacactgacattgtgattttgcaaaactcaccgccaatccaaacata |
6360481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 732 - 805
Target Start/End: Original strand, 24478767 - 24478841
Alignment:
| Q |
732 |
aatgggaatatcacaataaaatggg-atatcataagctggacagctgatggttatgttgtgagtacattctttta |
805 |
Q |
| |
|
||||| ||||||||||| |||||| |||| ||||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
24478767 |
aatggaaatatcacaatcaaatggatatattataagctaaacacttaatggttatgttgtgagtacattctttta |
24478841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 703 - 805
Target Start/End: Original strand, 5006198 - 5006300
Alignment:
| Q |
703 |
tttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatggttatgttgtgagtacattctt |
802 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||| ||| ||||| |||||||||||||||| |||| ||| || |
|
|
| T |
5006198 |
tttcagatgcttatgacccacttgacccaaatggtaatatcacgatcaaatgggatattatacaatggacccctgatggttatgttgtaagtatattatt |
5006297 |
T |
|
| Q |
803 |
tta |
805 |
Q |
| |
|
||| |
|
|
| T |
5006298 |
tta |
5006300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 357
Target Start/End: Original strand, 32285855 - 32285990
Alignment:
| Q |
223 |
gtgcatgtttggattgatggtgaaat-gacaaaatcatggtgaatcgccttgattttggctaaagctacacttttgagcttcccaaaatcacattgtcac |
321 |
Q |
| |
|
|||| |||||||||||||| ||| || | || ||||| ||| |||| || |||| ||| |||||||||| || ||||||| |||||| ||| || ||| |
|
|
| T |
32285855 |
gtgcgtgtttggattgatgatgacattggcagaatcacggtaaatcaccgtgatcttgagaaaagctacacattagagcttcacaaaatgacagtgccac |
32285954 |
T |
|
| Q |
322 |
tatgattttgcagaactcaccgtcaatccaaacata |
357 |
Q |
| |
|
|||| ||||| ||| |||||| ||||||||||||| |
|
|
| T |
32285955 |
catgaatttgctgaaatcaccgccaatccaaacata |
32285990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University