View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9817_low_10 (Length: 343)
Name: NF9817_low_10
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 3310811 - 3311146
Alignment:
| Q |
1 |
ctacacctgtatctttatctctgtctcttcatgaattatgtgttgtttactcaactcaacagagagagaaagacatgcaacacgtggatagggcatgtca |
100 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3310811 |
ctacacctgtatttgtatctctgtctcttcatgaattatgtgttgtttactcaactcaacagagagagaaagacatgcaacacgtggatagggcatgtca |
3310910 |
T |
|
| Q |
101 |
tcagatctcgttaaa--ctgatgattgatatgtgaggatagagaggagaaatgagtgctgctgcttttgcagattgaactataaactaggtctgagtgag |
198 |
Q |
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||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3310911 |
tcagatctcgttaaaaactgataactgatatgtgaggatagagaggagaaatgagtgttgctgcttttgcagattgcactataaactaggtctgagtgag |
3311010 |
T |
|
| Q |
199 |
agggttttcaactgtaaaaatatcttcataaatgacaaatatgaggcttggacatggagcagccttttgtacatgttgtgtgtggcgtgtgtgagaggtc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3311011 |
agggttttcaactgtaaaaatatcttcataaatgacaaatatgaggcttggacatggagcagccttttgtacatgttgtgtgtggcgtgtgtgagaggtc |
3311110 |
T |
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| Q |
299 |
aagaaagagacactactcttaaatgctcctttgctt |
334 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3311111 |
aagaaagagacactactcttaaatgctcctttgctt |
3311146 |
T |
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