View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9817_low_11 (Length: 334)

Name: NF9817_low_11
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9817_low_11
NF9817_low_11
[»] scaffold0038 (2 HSPs)
scaffold0038 (169-318)||(42060-42205)
scaffold0038 (198-276)||(25524-25595)
[»] chr6 (4 HSPs)
chr6 (169-318)||(28241898-28242043)
chr6 (204-318)||(28180243-28180349)
chr6 (198-276)||(28225026-28225097)
chr6 (88-130)||(11186463-11186505)
[»] scaffold0019 (3 HSPs)
scaffold0019 (239-318)||(58826-58905)
scaffold0019 (89-167)||(59092-59170)
scaffold0019 (15-95)||(59196-59276)
[»] chr1 (2 HSPs)
chr1 (15-95)||(25590529-25590609)
chr1 (88-128)||(25590464-25590504)
[»] chr4 (4 HSPs)
chr4 (15-93)||(25170543-25170620)
chr4 (15-94)||(7043066-7043144)
chr4 (89-130)||(50912380-50912421)
chr4 (32-94)||(6681406-6681471)
[»] chr7 (1 HSPs)
chr7 (15-80)||(8266217-8266282)
[»] chr3 (1 HSPs)
chr3 (45-94)||(11748524-11748573)


Alignment Details
Target: scaffold0038 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 169 - 318
Target Start/End: Original strand, 42060 - 42205
Alignment:
Q  169 atatatttcaagaagattttactttgtaagtt--taataatctgaaccattggctactttgattttgatatttatgttagactagattgcacggttcttg 266  Q
    ||||||||||||||||||||||||| ||   |  |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  42060 atatatttcaagaagattttactttatagtctaataataatctgaaccattggctactttg------atatttatgttagactagattgcacggttcttg 42153  T
Q  267 atattttcaattttatagattatatgcttataaatatttatcagtttcaaat 318  Q
    |||||||||| ||||||| | |||||||||||||||||| ||||||||||||    
T  42154 atattttcaactttatagttaatatgcttataaatatttctcagtttcaaat 42205  T

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Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 25524 - 25595
Alignment:
Q  198 gtttaataatctgaaccattggctactttgattttgatatttatgttagactagattgcacggttcttgatattttcaa 276  Q
    ||||||||||||| |||||| |||||||||      ||||||||||||||||||||| || | ||||||||||||||||    
T  25524 gtttaataatctgtaccatttgctactttg------atatttatgttagactagatt-catgattcttgatattttcaa 25595  T

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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 169 - 318
Target Start/End: Original strand, 28241898 - 28242043
Alignment:
Q  169 atatatttcaagaagattttactttgtaagtt--taataatctgaaccattggctactttgattttgatatttatgttagactagattgcacggttcttg 266  Q
    ||||||||||||||||||||||||| ||   |  |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  28241898 atatatttcaagaagattttactttatagtctaataataatctgaaccattggctactttg------atatttatgttagactagattgcacggttcttg 28241991  T
Q  267 atattttcaattttatagattatatgcttataaatatttatcagtttcaaat 318  Q
    |||||||||| ||||||| | |||||||||||||||||| ||||||||||||    
T  28241992 atattttcaactttatagttaatatgcttataaatatttctcagtttcaaat 28242043  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 28180243 - 28180349
Alignment:
Q  204 taatctgaaccattggctactttgattttgatatttatgttagactagattgcacggttcttgatattttcaattttatagattatatgcttataaatat 303  Q
    ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||    
T  28180243 taatctgaaccattggctactttg------atatttatgttagactagattgcacggttcttgatattttcaattttatagat--tatccatataaatat 28180334  T
Q  304 ttatcagtttcaaat 318  Q
    || ||||||||||||    
T  28180335 ttctcagtttcaaat 28180349  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 28225026 - 28225097
Alignment:
Q  198 gtttaataatctgaaccattggctactttgattttgatatttatgttagactagattgcacggttcttgatattttcaa 276  Q
    ||||||||||||| |||||| |||||||||      ||||||||||||||||||||| || | ||||||||||||||||    
T  28225026 gtttaataatctgtaccatttgctactttg------atatttatgttagactagatt-catgattcttgatattttcaa 28225097  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 11186505 - 11186463
Alignment:
Q  88 cttgatgagatctttatttggagcacaagatgtgagtgatctt 130  Q
    |||||||||||| || ||||| |||||||||||||||||||||    
T  11186505 cttgatgagatccttgtttggcgcacaagatgtgagtgatctt 11186463  T

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Target: scaffold0019 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 58905 - 58826
Alignment:
Q  239 tatgttagactagattgcacggttcttgatattttcaattttatagattatatgcttataaatatttatcagtttcaaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58905 tatgttagactagattgcacggttcttgatattttcaattttatagattatatgcttataaatatttatcagtttcaaat 58826  T

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Target: scaffold0019; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 59170 - 59092
Alignment:
Q  89 ttgatgagatctttatttggagcacaagatgtgagtgatctttgaatccactggaatcactatgaagtcaattaatgtt 167  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59170 ttgatgagatctttatttggagcgcaagatgtgagtgatctttgaatccactggaatcactatgaagtcaattaatgtt 59092  T

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Target: scaffold0019; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 59276 - 59196
Alignment:
Q  15 gagtgaggtgtgagtattgatttcttgagaaagcaagatgaataccaatggttttagatcaaacatcctggttcttgatga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  59276 gagtgaggtgtgagtattgatttcttgagaaagcaagatgaatagcaatggttttggatcaaacatcctggttcttgatga 59196  T

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Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 25590609 - 25590529
Alignment:
Q  15 gagtgaggtgtgagtattgatttcttgagaaagcaagatgaataccaatggttttagatcaaacatcctggttcttgatga 95  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  25590609 gagtcaggtgtgagcattgatttcttgaaaaagcaagatgaatagcaatggttttggatcaaacattctggttcttgatga 25590529  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 25590504 - 25590464
Alignment:
Q  88 cttgatgagatctttatttggagcacaagatgtgagtgatc 128  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  25590504 cttgatgagatctctatttggagaacaagatgtgagtgatc 25590464  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 25170543 - 25170620
Alignment:
Q  15 gagtgaggtgtgagtattgatttcttgagaaagcaagatgaataccaatggttttagatcaaacatcctggttcttgat 93  Q
    |||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||| || ||||||| ||| ||||||||    
T  25170543 gagtaaggtgtgagcattgatttctt-agaaagcaagatgaatagcaatggttttggaacaaacattctgattcttgat 25170620  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 7043144 - 7043066
Alignment:
Q  15 gagtgaggtgtgagtattgatttcttgagaaagcaagatgaataccaatggttttagatcaaacatcctggttcttgatg 94  Q
    ||||||||||||||| ||||||||||||  |||||||||||||| |||||||| | ||| |||||| || | ||||||||    
T  7043144 gagtgaggtgtgagtcttgatttcttga-taagcaagatgaataacaatggttatggattaaacattctagatcttgatg 7043066  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 50912380 - 50912421
Alignment:
Q  89 ttgatgagatctttatttggagcacaagatgtgagtgatctt 130  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  50912380 ttgatgagatctttgtttggcgcacaagatgtgagtgatctt 50912421  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 6681471 - 6681406
Alignment:
Q  32 tgatttcttgagaa---agcaagatgaataccaatggttttagatcaaacatcctggttcttgatg 94  Q
    ||||||||||||||   ||||||||||| || || |||||| ||||||||||| ||||||||||||    
T  6681471 tgatttcttgagaattaagcaagatgaacactaacggttttggatcaaacatcttggttcttgatg 6681406  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 8266217 - 8266282
Alignment:
Q  15 gagtgaggtgtgagtattgatttcttgagaaagcaagatgaataccaatggttttagatcaaacat 80  Q
    ||||||||||| || || |||||||||||||||||||||||||| |||||||||| || |||||||    
T  8266217 gagtgaggtgtaagcatagatttcttgagaaagcaagatgaataacaatggttttggaacaaacat 8266282  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 11748573 - 11748524
Alignment:
Q  45 aagcaagatgaataccaatggttttagatcaaacatcctggttcttgatg 94  Q
    |||||||||||| || || |||||||||||||||||| | ||||||||||    
T  11748573 aagcaagatgaacacaaacggttttagatcaaacatcttagttcttgatg 11748524  T

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