View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9817_low_13 (Length: 325)

Name: NF9817_low_13
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9817_low_13
NF9817_low_13
[»] chr2 (11 HSPs)
chr2 (1-306)||(14507415-14507720)
chr2 (23-253)||(14502845-14503076)
chr2 (83-276)||(14475354-14475544)
chr2 (76-253)||(14480532-14480709)
chr2 (145-253)||(14153558-14153666)
chr2 (131-253)||(14147089-14147211)
chr2 (135-224)||(14495387-14495476)
chr2 (78-220)||(14530015-14530157)
chr2 (117-253)||(14521260-14521395)
chr2 (78-253)||(14513333-14513506)
chr2 (117-303)||(14161493-14161679)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 14507720 - 14507415
Alignment:
Q  1 ttatatacactaactccaatcaacattatgtactaaatatgtattcaaatcgaataaggaacaagattaacattgttaaggttaaaatacctgaaaatat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14507720 ttatatacactagctccaatcaacattatgtactaaatatgtattcaaatcgaataaggaacaagattaacattgttaaggttaaaatacctgaaaatat 14507621  T
Q  101 gatcatggcgtgcaagttttgtctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaagactcgttctcaaaacgttttataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14507620 gatcatggcgtgcaagttttgtctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaagactcgttctcaaaacgttttataa 14507521  T
Q  201 acttatcaagaaacaacttctcaggcactataaacggagaagttaagcttgcagtcctttttcgtagacctttctttagcaggaattgcacaattggggc 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14507520 acttatcaagaaacaacttctcaggcactataaatggagaagttaagcttgcagtcctttttcgcagacctttctttagcaggaattgcacaattggggc 14507421  T
Q  301 ccttgg 306  Q
    ||||||    
T  14507420 ccttgg 14507415  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 14503076 - 14502845
Alignment:
Q  23 acattatgtactaaatatgtattcaaatcgaataaggaacaagattaacattgttaaggttaaaatacctgaaaa-tatgatcatggcgtgcaagttttg 121  Q
    ||||| |||| |||| ||||||||||||| ||||| ||| |||| ||||||| |||||| ||||||||||||||| | |||||||  |  |||| |||||    
T  14503076 acattctgtattaaacatgtattcaaatcaaataaagaataagaataacattattaaggctaaaatacctgaaaaatctgatcattacacgcaatttttg 14502977  T
Q  122 tctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaagactcgttctcaaaacgttttataaacttatcaagaaacaacttct 221  Q
    |   |||||| | |||| ||||||||||| || ||||||||||| |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||    
T  14502976 ttcttggtgtgtgcaagattgagtttttcttcgtacagctttaaaagataagaagccgcattctcaaaacgttttataaacatatcaagaaacaacttct 14502877  T
Q  222 caggcactataaacggagaagttaagcttgca 253  Q
    |||||| ||  || ||| || |||||||||||    
T  14502876 caggcattaagaatggataaattaagcttgca 14502845  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 83 - 276
Target Start/End: Original strand, 14475354 - 14475544
Alignment:
Q  83 taaaatacctgaaaatatgatcatggcgtgcaagttttgtctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaagactcgt 182  Q
    |||||||||||||||| | ||||||  ||||| |||||||| ||||||||  |||| ||||||||||||||||||| |||||| ||||||||||||||      
T  14475354 taaaatacctgaaaatctaatcatgatgtgcatgttttgtccatggtgtaagcaagattgagtttttcctcatacaactttaatagataagaagactc-- 14475451  T
Q  183 tctcaaaacgttttataaacttatcaagaaacaacttctcaggcactataaacggagaagttaagcttgcagtcctttttcgtagacctttctt 276  Q
     || || ||  |||||| || |||||||||||| |||||||| ||||| ||| ||| |||||||||||||| || ||||||| | |||||||||    
T  14475452 -cttaataccctttatacacgtatcaagaaacagcttctcagacactacaaatggacaagttaagcttgcattcttttttcgcaaacctttctt 14475544  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 14480532 - 14480709
Alignment:
Q  76 ttaaggttaaaatacctgaaaatatgatcatggcgtgcaagttttgtctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaa 175  Q
    |||||| |||||||| ||||||| | |||||| | |||||||||||||  | |||||| |||| |||||||| ||||| ||||||||||||| || ||||    
T  14480532 ttaaggctaaaatacttgaaaatctaatcatgacatgcaagttttgtccctagtgtatgcaagattgagtttgtcctcgtacagctttaacatattagaa 14480631  T
Q  176 gactcgttctcaaaacgttttataaacttatcaagaaacaacttctcaggcactataaacggagaagttaagcttgca 253  Q
    | ||| ||||||||| ||||||||||| |||||||||||  ||||||||  || | ||| ||| ||||||||||||||    
T  14480632 gcctcattctcaaaatgttttataaacctatcaagaaacctcttctcagtaacaacaaatggataagttaagcttgca 14480709  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 14153666 - 14153558
Alignment:
Q  145 tttttcctcatacagctttaacagataagaagactcgttctcaaaacgttttataaacttatcaagaaacaacttctcaggcactataaacggagaagtt 244  Q
    |||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||| ||| |||||||||||| |||| ||| | ||| ||| |||||    
T  14153666 tttttcctcatacaactttaaaagataagaagcctcattctcaaaacgttttataaacatattaagaaacaacttatcagtcaccacaaatggataagtt 14153567  T
Q  245 aagcttgca 253  Q
    |||||||||    
T  14153566 aagcttgca 14153558  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 14147211 - 14147089
Alignment:
Q  131 tatccaaggttgagtttttcctcatacagctttaacagataagaagactcgttctcaaaacgttttataaacttatcaagaaacaacttctcaggcacta 230  Q
    ||||| || ||| ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||| ||  |||||||||||| |||| ||| |    
T  14147211 tatcctagattgcgtttttcctcatacaactttaaaagataagaagcctcattctcaaaacgttttataaacatactaagaaacaacttatcagtcacga 14147112  T
Q  231 taaacggagaagttaagcttgca 253  Q
     ||| ||| ||||||||||||||    
T  14147111 caaatggataagttaagcttgca 14147089  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 14495476 - 14495387
Alignment:
Q  135 caaggttgagtttttcctcatacagctttaacagataagaagactcgttctcaaaacgttttataaacttatcaagaaacaacttctcag 224  Q
    |||| ||||||||||||||||||| |||||  |||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||    
T  14495476 caagcttgagtttttcctcatacaactttataagataagaagactcattcttaaaacgttttataaacatatcaagaaacaacttttcag 14495387  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 14530157 - 14530015
Alignment:
Q  78 aaggttaaaatacctgaaaatatgatcatggcgtgcaagttttgtctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaaga 177  Q
    |||| |||||||||||||||||| |||||| | |||| |||| |||  |||||||| || | ||| |||||| |||||||| |||||| ||||||||||     
T  14530157 aaggctaaaatacctgaaaatataatcatgacatgcatgtttagtccgtggtgtatacatgattgtgttttttctcatacaactttaaaagataagaagc 14530058  T
Q  178 ctcgttctcaaaacgttttataaacttatcaagaaacaacttc 220  Q
    ||| | ||||||| ||| | ||||| | ||| |||||||||||    
T  14530057 ctcatgctcaaaatgttctctaaacatttcaggaaacaacttc 14530015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 14521395 - 14521260
Alignment:
Q  117 ttttgtctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaagactcgttctcaaaacgttttataaacttatcaagaaacaa 216  Q
    |||||||  |||||||| |||||||||||||||||||||||| |||||| ||||| ||| |||| |||| || || ||| || ||| ||||| | |||||    
T  14521395 ttttgtccctggtgtatgcaaggttgagtttttcctcatacaactttaatagataggaatactccttcttaatacctttgattaacatatcacg-aacaa 14521297  T
Q  217 cttctcaggcactataaacggagaagttaagcttgca 253  Q
    |||||||  || || ||| ||| ||||||||||||||    
T  14521296 cttctcaaacattacaaaaggacaagttaagcttgca 14521260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 253
Target Start/End: Complemental strand, 14513506 - 14513333
Alignment:
Q  78 aaggttaaaatacctgaaaatatgatcatggcgtgcaagttttgtctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaaga 177  Q
    |||| |||||||||| ||||| | || ||| | |||| ||||||||   ||||||| ||||||||||||||||| |||||| |||||| ||||| ||| |    
T  14513506 aaggctaaaataccttaaaatctaattatgacatgcatgttttgtcccaggtgtatgcaaggttgagtttttccacatacaactttaatagataggaata 14513407  T
Q  178 ctcgttctcaaaacgttttataaacttatcaagaaacaacttctcaggcactataaacggagaagttaagcttgca 253  Q
    ||| |||| || || ||| |||||| ||| | | ||||||||||||| || || ||| ||| ||||||||||||||    
T  14513406 ctccttcttaatacctttgataaacatatgatg-aacaacttctcagacattacaaa-ggacaagttaagcttgca 14513333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 303
Target Start/End: Original strand, 14161493 - 14161679
Alignment:
Q  117 ttttgtctatggtgtatccaaggttgagtttttcctcatacagctttaacagataagaagactcgttctcaaaacgttttataaacttatcaagaaacaa 216  Q
    |||||||  |||||| | |||| || || ||||| ||||| |||||||| |||||||| ||||| | || ||||||| ||||  |  | | ||| ||| |    
T  14161493 ttttgtccctggtgtgtgcaagattcagcttttcttcatagagctttaagagataagatgactcctccttaaaacgtattatgtatgtgttaaggaacga 14161592  T
Q  217 cttctcaggcactataaacggagaagttaagcttgcagtcctttttcgtagacctttctttagcaggaattgcacaattggggccct 303  Q
    ||| |||| || || ||| |||| ||||||||||||| || |||| || | |||||||||||| ||  ||||||||| || ||||||    
T  14161593 cttatcagtcattacaaatggagtagttaagcttgcattctttttccgcaaacctttctttagaagatattgcacaactgaggccct 14161679  T

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