View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9817_low_15 (Length: 260)
Name: NF9817_low_15
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 32833455 - 32833203
Alignment:
| Q |
1 |
tatttatttgtagcctctagagcatagattttaaaacctatcaccattagtgccacaataatatggaagctacatccaagcaaaaccatgaccctgtcaa |
100 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833455 |
tatttatttgtagcctgtagggcatagattttaaaacctatcatcattagtgccacaataatatggaagctacatccaagcaaaaccatgaccctgtcaa |
32833356 |
T |
|
| Q |
101 |
tgaatgcaccaacttcactctcttatcaaaccatctcctttcaaaactcccatatttcctatggctttgtagcatcacacttgcaacatttgctcaagct |
200 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833355 |
tgaatgcaccaacttcactcttttttcaaaccatctcctttcaaaactctcatatttcctatggctttgtagcatcacacttgcaacatttgctcaagct |
32833256 |
T |
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| Q |
201 |
ttctcacttcttcaaaactatgaac---taatcttccattttttgttcctatg |
250 |
Q |
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|||| |||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
32833255 |
ttcttacttcttcaaaactatgaactaataatgttccattttttgttcctatg |
32833203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 32846736 - 32846484
Alignment:
| Q |
1 |
tatttatttgtagcctctagagcatagattttaaaacctatcaccattagtgccacaataatatggaagctacatccaagcaaaaccatgaccctgtcaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32846736 |
tatttatttgtagcctctagggcatagattttaaaacctatcatcattagtgccacaataatatggaagctacatccaagcaaaaccatgaccctgtcaa |
32846637 |
T |
|
| Q |
101 |
tgaatgcaccaacttcactctcttatcaaaccatctcctttcaaaactcccatatttcctatggctttgtagcatcacacttgcaacatttgctcaagct |
200 |
Q |
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| T |
32846636 |
tgaatgcaccaacttcactcttttttcaaaccatctcctttcaaaactctcatatttcctatggctttgtagcatcacacttgcaacatttgctcaaact |
32846537 |
T |
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| Q |
201 |
ttctcacttcttcaaaactatgaac---taatcttccattttttgttcctatg |
250 |
Q |
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|||| |||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
32846536 |
ttcttacttcttcaaaactatgaactaataatgttccattttttgttcctatg |
32846484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 17931202 - 17931440
Alignment:
| Q |
1 |
tatttatttgtagcctctagagcatagattttaaaacctatcaccattagtgccacaataatatggaagctacatccaagcaaaaccatgaccctgtcaa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| || |||||| ||| ||||||||||||||| |
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| T |
17931202 |
tatttatttgtagcctctagggcatagattttaaaacttatcaccattagt-----------atggaagccacttccaagaaaagccatgaccctgtcaa |
17931290 |
T |
|
| Q |
101 |
tgaatgcaccaacttcactctcttatcaaaccatctcctttcaaaactcccatatttcctatggctttgtagcatcacacttgcaacatttgctcaagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
17931291 |
tgaatgcaccaacttcactctcttatcaaaccatctcctttcaaaactctcatatttcctattcctttgtagcatcatacttgcaacatttgctcaagct |
17931390 |
T |
|
| Q |
201 |
ttctcacttcttcaaaactatgaactaatcttccattttttgttcctatg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17931391 |
ttctcacttcttcaaaactatgaactaatcttccattttttgttcctatg |
17931440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 46187775 - 46187956
Alignment:
| Q |
63 |
atggaagctacatccaagcaaaaccatgaccct---gtcaatgaatgcaccaacttcactctcttatcaaaccatctcctttcaaaactcccatatttcc |
159 |
Q |
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||||||||||| ||||||| |||||||| | || ||||||||||||||||||||||||||||||||||| ||||| ||||| | || || |||||| |
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| T |
46187775 |
atggaagctacttccaagccaaaccatgtctctatcttcaatgaatgcaccaacttcactctcttatcaaactatctcgtttcacacttctcacatttcc |
46187874 |
T |
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| Q |
160 |
tatggctttgtagcatcacacttgcaacatttgctcaagctttctcacttcttcaaaactatgaactaatcttccatttttt |
241 |
Q |
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||||||||| |||||| ||||| |||||||||| | |||| |||| | |||| ||||||||||||| ||| |||||| |||| |
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| T |
46187875 |
tatggctttctagcataacactagcaacatttgttgaagcattcttatttctccaaaactatgaaccaatgttccatgtttt |
46187956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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