View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9817_low_16 (Length: 244)
Name: NF9817_low_16
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 35355185 - 35355417
Alignment:
| Q |
1 |
actcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355185 |
actcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcacc |
35355284 |
T |
|
| Q |
101 |
agatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355285 |
agatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatgg |
35355384 |
T |
|
| Q |
201 |
tatctacacttaatatggccatttacaatgttc |
233 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
35355385 |
tatctacacttaatgtggccatttacaatgttc |
35355417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 35370632 - 35370864
Alignment:
| Q |
1 |
actcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcacc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
35370632 |
actcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacctcattgatgagaccaaaggagtcacc |
35370731 |
T |
|
| Q |
101 |
agatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatgg |
200 |
Q |
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||||||||||||||||||||||||||| ||| || |||| || |||||| | ||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
35370732 |
agatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagcatccaaccctcaaacatctaaatgg |
35370831 |
T |
|
| Q |
201 |
tatctacacttaatatggccatttacaatgttc |
233 |
Q |
| |
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|| ||||| ||||| ||||| |||||||||||| |
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| T |
35370832 |
tacctacatttaatgtggccctttacaatgttc |
35370864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 35381199 - 35381429
Alignment:
| Q |
1 |
actcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcacc |
100 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35381199 |
actcactcttcatgcctatatatgactacatttatggcaccgtagataaatccacagatgctacatatgaagcctcattgatgagaccaaaggagtcacc |
35381298 |
T |
|
| Q |
101 |
agatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatgg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| || |||||| | |||||||||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
35381299 |
agatgtggtccacttaacacatttaactacacttagttccatctatcaattacgtttaggctttacttcattagcctccaatcctcaaacatctaaatgg |
35381398 |
T |
|
| Q |
201 |
tatctacacttaatatggccatttacaatgt |
231 |
Q |
| |
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|| ||| | ||||| ||||| |||||||||| |
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| T |
35381399 |
tacctatatttaatgtggccctttacaatgt |
35381429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 19629474 - 19629248
Alignment:
| Q |
1 |
actcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcacc |
100 |
Q |
| |
|
||||||| |||||||| || |||||||||||||||||||||||| || |||||||||||||||||||||| | | |||| ||||| | |||| ||||| |
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| T |
19629474 |
actcactcttcatgcctatatatgactacatttatggtacagtggatgcatccacagatgctacatatgaatcttgtttgaagagacaagaggaatcacc |
19629375 |
T |
|
| Q |
101 |
agatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatgg |
200 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||| || | |||| | || ||||| |||||||||||||| ||||| |||||||| ||||||||| |
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| T |
19629374 |
agatgtggtgcacttaacacatttaacaacacttgattctatctttcaactacgcttagggtttgcttccttagcctccaaccctcaaacttctaaatgg |
19629275 |
T |
|
| Q |
201 |
tatctacacttaatatggccatttaca |
227 |
Q |
| |
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||||| | ||||| ||||| |||||| |
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| T |
19629274 |
tatctcaatttaatgtggccttttaca |
19629248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 19685177 - 19685407
Alignment:
| Q |
1 |
actcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcacc |
100 |
Q |
| |
|
||||||| |||||||| || |||||| ||||||||||||| ||| ||| |||| ||||||||||||||||| | | | || ||||| | |||||||||| |
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| T |
19685177 |
actcactcttcatgcctatatatgaccacatttatggtactgtggatacatcctcagatgctacatatgaagcttgttcgaagagacaagaggagtcacc |
19685276 |
T |
|
| Q |
101 |
agatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatgg |
200 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||| || | |||| | |||||||| ||||||||||||| ||||| ||||||||||| |||||| |
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| T |
19685277 |
agatgtggtgcacttaacacatttaacaacacttgattccatctttcaactacgtttagggcttgcttccttagcctccaaccctcaaacatcgaaatgg |
19685376 |
T |
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| Q |
201 |
tatctacacttaatatggccatttacaatgt |
231 |
Q |
| |
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||||| | ||||| ||||| |||||||||| |
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| T |
19685377 |
tatctcaatttaatgtggccttttacaatgt |
19685407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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