View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9817_low_20 (Length: 223)

Name: NF9817_low_20
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9817_low_20
NF9817_low_20
[»] chr6 (1 HSPs)
chr6 (17-206)||(31273906-31274095)
[»] chr1 (5 HSPs)
chr1 (20-202)||(26215372-26215554)
chr1 (33-197)||(9802095-9802259)
chr1 (34-200)||(37737098-37737264)
chr1 (142-204)||(49639396-49639458)
chr1 (34-67)||(32611003-32611036)
[»] chr3 (3 HSPs)
chr3 (17-206)||(23373624-23373814)
chr3 (46-206)||(19428307-19428467)
chr3 (142-204)||(53979841-53979903)
[»] chr7 (3 HSPs)
chr7 (19-200)||(3005158-3005339)
chr7 (82-185)||(19813037-19813140)
chr7 (124-197)||(18477788-18477861)
[»] chr2 (3 HSPs)
chr2 (117-183)||(4939057-4939123)
chr2 (117-183)||(5024147-5024213)
chr2 (34-200)||(23682475-23682641)
[»] scaffold0164 (1 HSPs)
scaffold0164 (142-204)||(25469-25531)
[»] chr8 (2 HSPs)
chr8 (148-206)||(18550969-18551027)
chr8 (142-203)||(15194824-15194885)
[»] chr4 (1 HSPs)
chr4 (142-203)||(18255691-18255752)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 31274095 - 31273906
Alignment:
Q  17 cagagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatg 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  31274095 cagagaaccccaaaatctgaagagctgaatctctaggaaagaataaacctttgcctaaagatgttttaagatatttgagtactctcatagcagcagaatg 31273996  T
Q  117 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 206  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273995 atgaacttgtgtacgcttagcgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 31273906  T

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Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 26215554 - 26215372
Alignment:
Q  20 agaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatg 119  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  26215554 agaaccccaaaatctgaagagctgaatctctaggaaaaaataaaccttttcctagagatgttttaagatatttgagcactctcatagcagcagaatgatg 26215455  T
Q  120 aacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaaca 202  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26215454 aacttgggtaggcttagtgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaaca 26215372  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 9802095 - 9802259
Alignment:
Q  33 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 132  Q
    |||||| || ||||||||||  ||||| ||||||| ||||||| |  | ||||| ||  |||||||||||||||||| || |   ||||  ||||| ||     
T  9802095 ctgaagtgtggaatctctagtgaagaacaaacctttgcctggacaactcttaaggtacctgagtactctcatagcagcagtaaagtgaatatgtgtgggt 9802194  T
Q  133 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 197  Q
    |||| ||| || || ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  9802195 ttagtgagaaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagata 9802259  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 37737098 - 37737264
Alignment:
Q  34 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 133  Q
    |||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| ||||    
T  37737098 tgaatagtggaatctctgggaaagagtaatcctttgcctggacaacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggct 37737197  T
Q  134 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 200  Q
    | | ||| || || |||||||||||  | | ||| ||||||||||||||||||||||| ||||||||    
T  37737198 tggtgagaaattgactcaattgttgtattataaaggtaatatcaggtcttgttgtgttcagatacaa 37737264  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 49639396 - 49639458
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 204  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  49639396 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 49639458  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 32611003 - 32611036
Alignment:
Q  34 tgaagagttgaatctctaggaaagaataaacctt 67  Q
    ||||||| ||||||||||||||||||||||||||    
T  32611003 tgaagaggtgaatctctaggaaagaataaacctt 32611036  T

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Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 23373624 - 23373814
Alignment:
Q  17 cagagaaccccaaaa-tctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaat 115  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||| || |||||    
T  23373624 cagagaaccccaaaaatatgaagagttgaatctctaggaaataataaacctttgcctgaagatgttttaagatatctgagcactctcatagtagcagaat 23373723  T
Q  116 gatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 206  Q
    | |||||||| |||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  23373724 ggtgaacttgggtaggcttggtaaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgctgtgttaagatgcaacaacct 23373814  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 206
Target Start/End: Complemental strand, 19428467 - 19428307
Alignment:
Q  46 tctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaact 145  Q
    |||||||||||||||||||| | || |||| ||| |||||| ||  |||| ||||||||||||| | |||| |||||||| ||||| ||||  ||||| |    
T  19428467 tctctaggaaagaataaacccttgcttggaaatgatttaaggtacctgagcactctcatagcagcataatggtgaacttgagtaggtttagtaaggaatt 19428368  T
Q  146 ggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 206  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||    
T  19428367 ggctcaattgttgagtgacaaaggtaatgtcaggtcttgttgtgttgagatacaacaacct 19428307  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 53979903 - 53979841
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 204  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  53979903 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 53979841  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 3005339 - 3005158
Alignment:
Q  19 gagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgat 118  Q
    ||||| |||| || ||||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||    
T  3005339 gagaaacccagaagctgaatagtggaatctctgggaaagagtaatcctttgcctggataacttttgaggtacctgagcactctcatagcagcagtgtaat 3005240  T
Q  119 gaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 200  Q
    | | |||||| ||||| | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||    
T  3005239 gtatttgtgttggcttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaa 3005158  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 19813037 - 19813140
Alignment:
Q  82 ttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtc 181  Q
    ||||||||| |||||||||||||||||| |  ||  ||||  |||||||| || | ||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  19813037 ttaagatatctgagtactctcatagcagcattatagtgaatgtgtgtaggtttggagagaaactggctcaattgttgtgtaataaaggtaatattaggtc 19813136  T
Q  182 ttgt 185  Q
    ||||    
T  19813137 ttgt 19813140  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 18477861 - 18477788
Alignment:
Q  124 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 197  Q
    |||||||| |||  ||| || |||||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  18477861 tgtgtaggtttattgagaaattggctcaattcttgagtaacaaaagtaatatcaggtctagttgtattgagata 18477788  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 4939057 - 4939123
Alignment:
Q  117 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtctt 183  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| ||||||||||||    
T  4939057 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtctt 4939123  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 5024147 - 5024213
Alignment:
Q  117 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtctt 183  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| ||||||||||||    
T  5024147 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtctt 5024213  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 23682641 - 23682475
Alignment:
Q  34 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 133  Q
    |||| ||| |||||| | ||||| | ||| |||| ||||||| |  |||| |||||  |||| ||||||||||||| |   | ||| |||||||| ||||    
T  23682641 tgaatagtggaatctttgggaaaaagtaatcctttgcctggacaacttttgagatacctgagcactctcatagcagcaatgtaatgtacttgtgttggct 23682542  T
Q  134 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 200  Q
    | | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||    
T  23682541 tggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaa 23682475  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 25469 - 25531
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 204  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  25469 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 25531  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 18550969 - 18551027
Alignment:
Q  148 ctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 206  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||    
T  18550969 ctcaattgttgagtaacaaaagtgatatcaggtcttgttgtattgagataaagcaacct 18551027  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 15194885 - 15194824
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 203  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  15194885 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 15194824  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 18255752 - 18255691
Alignment:
Q  142 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 203  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  18255752 aactgactcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 18255691  T

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