View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9817_low_22 (Length: 206)

Name: NF9817_low_22
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9817_low_22
NF9817_low_22
[»] chr3 (15 HSPs)
chr3 (71-191)||(37644098-37644218)
chr3 (71-189)||(37635812-37635930)
chr3 (71-189)||(37638726-37638844)
chr3 (71-191)||(37647011-37647131)
chr3 (71-191)||(37649924-37650044)
chr3 (21-97)||(37644220-37644296)
chr3 (21-97)||(37650046-37650122)
chr3 (21-97)||(37635932-37636008)
chr3 (21-97)||(37638846-37638922)
chr3 (21-97)||(37647133-37647209)
chr3 (18-62)||(37636002-37636046)
chr3 (18-62)||(37638916-37638960)
chr3 (18-62)||(37644290-37644334)
chr3 (18-62)||(37647203-37647247)
chr3 (18-62)||(37650116-37650160)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 37644218 - 37644098
Alignment:
Q  71 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 170  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37644218 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37644119  T
Q  171 agatgttcttctaaccaaagt 191  Q
    |||||||||||||||||||||    
T  37644118 agatgttcttctaaccaaagt 37644098  T

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Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 37635930 - 37635812
Alignment:
Q  71 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 170  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37635930 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37635831  T
Q  171 agatgttcttctaaccaaa 189  Q
    |||||||||||||||||||    
T  37635830 agatgttcttctaaccaaa 37635812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 37638844 - 37638726
Alignment:
Q  71 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 170  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37638844 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37638745  T
Q  171 agatgttcttctaaccaaa 189  Q
    |||||||||||||||||||    
T  37638744 agatgttcttctaaccaaa 37638726  T

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Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 37647131 - 37647011
Alignment:
Q  71 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 170  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  37647131 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctattttctcctcagtacgt 37647032  T
Q  171 agatgttcttctaaccaaagt 191  Q
    |||||||||||||||||||||    
T  37647031 agatgttcttctaaccaaagt 37647011  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 37650044 - 37649924
Alignment:
Q  71 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 170  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||    
T  37650044 tcagcatgatccaatatagtgaacaaatatccaatagcatttttaaaatggtagatatgtgaaaaatatccaattctcttctcatttctcctcagtacgt 37649945  T
Q  171 agatgttcttctaaccaaagt 191  Q
    |||||||||||||||||||||    
T  37649944 agatgttcttctaaccaaagt 37649924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 37644296 - 37644220
Alignment:
Q  21 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37644296 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 37644220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 37650122 - 37650046
Alignment:
Q  21 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37650122 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 37650046  T

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Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 37636008 - 37635932
Alignment:
Q  21 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 97  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37636008 ccaacaatggaaaatgaagacacatatgtcttaaacccacaactcaaacttcagcatgatccaatatagtgaacaaa 37635932  T

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Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 37638922 - 37638846
Alignment:
Q  21 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 97  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37638922 ccaacaatggaaaatgaagacacatatgtcttaaacccacaactcaaacttcagcatgatccaatatagtgaacaaa 37638846  T

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Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 37647209 - 37647133
Alignment:
Q  21 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  37647209 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttttgcatgatccaatatagtgaacaaa 37647133  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37636046 - 37636002
Alignment:
Q  18 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 62  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37636046 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37636002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37638960 - 37638916
Alignment:
Q  18 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 62  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37638960 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37638916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37644334 - 37644290
Alignment:
Q  18 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 62  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37644334 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37644290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37647247 - 37647203
Alignment:
Q  18 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 62  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37647247 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37647203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37650160 - 37650116
Alignment:
Q  18 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 62  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37650160 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37650116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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