View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9817_low_4 (Length: 492)
Name: NF9817_low_4
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 3789899 - 3790360
Alignment:
| Q |
19 |
tatgttaatctcaacctcagctcgaaattatgttatatcggaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaacatgatcaattg |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789899 |
tatgttaatctcaacctaagctcgaaattatgttacatcagaaattagtaacaaaagagtatagaaacatatatcacaaacaatggaacatgatcaattc |
3789998 |
T |
|
| Q |
119 |
tttatgcaattcagccacgtgtatgcctaccactgcgactaaagagtagcagtagtttgatatactacttgagtgagttaaggtttacaatattacaagt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789999 |
tttatgcaattcagccacgtgtatgcctaccactgcgactaaagagtagcagtagttcgatatactacttgagtgagttaaggtttacaatattacaagt |
3790098 |
T |
|
| Q |
219 |
catatgtata----gtactacgatcaacgtttcaacaatatctctaaagttgaagggagcttcgcaatgccatgctagatgatcaccttcctcgcccttc |
314 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3790099 |
catatgtatatatggtactacgatccacgtttcaacaatagatctaaagttgaagggagcttcgcaatgccatgctagatgatcaccttcctcttccttc |
3790198 |
T |
|
| Q |
315 |
ccctcgtatgtgtctatgagtagtcatactcaacaaattaattgaaaacaaattagaataatcataagcgagataagttttaattgagatgatgagttta |
414 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3790199 |
ccctcttatgtgtctatgagtagtcatactcaacaaattaattgaaaacaaattagaataatcataagcgagataagttctaattgagatgatgagttta |
3790298 |
T |
|
| Q |
415 |
nnnnnnnncttgttgagaaatatgactatttgctcctattcctacaattctattgagatgatg |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3790299 |
-ttttttccttgttgagaaatatgactatttgctcctattcctacaattctattgagatgatg |
3790360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 34940260 - 34940209
Alignment:
| Q |
185 |
acttgagtgagttaaggtttacaatattacaagtcatatgtatagtactacg |
236 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
34940260 |
acttgagtgaattaaggtttacaaagttacaagccatatatatagtactacg |
34940209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 8808196 - 8808245
Alignment:
| Q |
179 |
tatactacttgagtgagttaaggtttacaatattacaagtcatatgtata |
228 |
Q |
| |
|
|||| ||||||||||||||| |||||||| | ||||||||||||| |||| |
|
|
| T |
8808196 |
tatattacttgagtgagttagggtttacattgttacaagtcatatatata |
8808245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 38970131 - 38970059
Alignment:
| Q |
178 |
atatactacttgagtgagttaaggtttacaatattacaagtcatatgtatagtactacgatcaacgtttcaac |
250 |
Q |
| |
|
||||| ||||||||||| ||| |||||||| | ||||||| |||| |||||||||||| |||| ||| |||| |
|
|
| T |
38970131 |
atatattacttgagtgaattagggtttacagtgttacaagccatagatatagtactacgttcaaagttacaac |
38970059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University