View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9817_low_6 (Length: 461)
Name: NF9817_low_6
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 71 - 445
Target Start/End: Complemental strand, 9836158 - 9835784
Alignment:
| Q |
71 |
gctctggtgtggggaaagatcccttgctcaaaagagcatactaaacacctagatattcaacacatttattgaaacaaaaccgaaaattcgaaaaaattgc |
170 |
Q |
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| T |
9836158 |
gctctggtgtggggaaagatcccttgctcaaaagagcatactaaacacctagatattcaacacatttattgaaacaaaaccgaaaattcgaaaaaattgc |
9836059 |
T |
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| Q |
171 |
actctctgtgaaccaagtagaaccattgtgtgattacttggattctactttcttaattactaccatttactttccacttgcaagctggttgcggatgcgt |
270 |
Q |
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| T |
9836058 |
actctctgtgaaccaagcagaaccattgtgtgattacttggattctactttcttaattactaccatttactttccacttgcaagctggttgcggatgcgt |
9835959 |
T |
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| Q |
271 |
tttgtggcctcaaccatggcagtgagggctgggttcacctcggtgtacttgcgagttttgagaccacaatcgggattgacccacaaaacgtttttctcaa |
370 |
Q |
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| T |
9835958 |
tttgtggcctcaaccatggcagtgagggctgggttcacctcggtgtacttgcgagttttgagaccacaatcgggattgacccacaaaacgtttttctcaa |
9835859 |
T |
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| Q |
371 |
gcactgcaagcatcttgttgatcctctcagcaatttcttcagttggtggtattcttggggagtgaatgtcataaa |
445 |
Q |
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| T |
9835858 |
gcactgcaagcatcttgttgatcctctcagcaatttcttcagttggtggtattcttggggagtgaatgtcataaa |
9835784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9836230 - 9836197
Alignment:
| Q |
1 |
tcaattgcattatataatagaggcaatgccacag |
34 |
Q |
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| T |
9836230 |
tcaattgcattatataatagaggcaatgccacag |
9836197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 443
Target Start/End: Original strand, 33466453 - 33466602
Alignment:
| Q |
294 |
gagggctgggttcacctcggtgtacttgcgagttttgagaccacaatcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatc |
393 |
Q |
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|||||| || || ||||| |||||||| || ||||| || ||||| || || ||||||||||||||||| |||||||| || |||||||||||||||||| |
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| T |
33466453 |
gagggcaggcttaacctctgtgtacttacgggtttttagcccacagtcagggttgacccacaaaacgttcttctcaaggacagcaagcatcttgttgatc |
33466552 |
T |
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| Q |
394 |
ctctcagcaatttcttcagttggtggtattcttggggagtgaatgtcata |
443 |
Q |
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| T |
33466553 |
ctgtcggcgatctcgtcggttggtgggattcttggggagtggatgtcata |
33466602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 445
Target Start/End: Complemental strand, 35948503 - 35948365
Alignment:
| Q |
307 |
acctcggtgtacttgcgagttttgagaccacaatcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatcctctcagcaattt |
406 |
Q |
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||||| ||||| || || ||||| ||||||||||| || |||||||| | | ||| | ||||| || ||||||||||||||||| || |||||||||| |
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| T |
35948503 |
acctcagtgtattttcgcgttttaagaccacaatctgggttgacccaaaggatgttgctttcaagaacagcaagcatcttgttgattctatcagcaattt |
35948404 |
T |
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| Q |
407 |
cttcagttggtggtattcttggggagtgaatgtcataaa |
445 |
Q |
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| T |
35948403 |
cttctgtgggtggaatccttggtgagtgaatatcataaa |
35948365 |
T |
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