View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9817_low_7 (Length: 449)

Name: NF9817_low_7
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9817_low_7
NF9817_low_7
[»] chr5 (6 HSPs)
chr5 (22-276)||(30181656-30181914)
chr5 (354-436)||(17697257-17697339)
chr5 (351-436)||(17947004-17947089)
chr5 (351-432)||(20252736-20252817)
chr5 (351-433)||(9195709-9195791)
chr5 (356-430)||(21824009-21824083)
[»] chr7 (4 HSPs)
chr7 (351-436)||(27293010-27293095)
chr7 (351-436)||(6457865-6457950)
chr7 (351-438)||(641695-641782)
chr7 (351-432)||(8751244-8751325)
[»] chr6 (6 HSPs)
chr6 (351-436)||(2855337-2855422)
chr6 (351-436)||(5194326-5194411)
chr6 (351-419)||(18488495-18488563)
chr6 (355-429)||(20209053-20209127)
chr6 (355-429)||(22103076-22103150)
chr6 (356-430)||(16478827-16478901)
[»] chr2 (9 HSPs)
chr2 (351-436)||(13139015-13139100)
chr2 (351-436)||(45702407-45702492)
chr2 (353-436)||(22863972-22864055)
chr2 (351-433)||(45469357-45469440)
chr2 (351-438)||(16936683-16936770)
chr2 (351-438)||(17007343-17007430)
chr2 (351-438)||(17064892-17064979)
chr2 (351-404)||(15139468-15139521)
chr2 (351-436)||(26403768-26403853)
[»] chr8 (2 HSPs)
chr8 (327-436)||(21312540-21312649)
chr8 (351-436)||(8305836-8305921)
[»] chr3 (2 HSPs)
chr3 (354-436)||(12214288-12214370)
chr3 (356-430)||(30044020-30044094)
[»] chr4 (7 HSPs)
chr4 (351-436)||(17188512-17188597)
chr4 (351-432)||(28066987-28067068)
chr4 (351-436)||(39867106-39867191)
chr4 (351-408)||(46192015-46192072)
chr4 (363-430)||(137074-137141)
chr4 (394-435)||(21140749-21140790)
chr4 (365-438)||(26892140-26892213)
[»] scaffold0155 (1 HSPs)
scaffold0155 (355-433)||(32828-32906)
[»] chr1 (3 HSPs)
chr1 (351-417)||(34504003-34504069)
chr1 (355-430)||(16631181-16631256)
chr1 (354-384)||(14206310-14206340)
[»] scaffold0074 (1 HSPs)
scaffold0074 (351-408)||(37229-37286)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 30181914 - 30181656
Alignment:
Q  22 acactatctcttattggaatgataacaaattgctccacttaaattgtgaaatagagaactgtttggcgaatctctactcatgtggaagcccacactaatt 121  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30181914 acactatcccttattggaatgataacaaattgcttcacttaaattgtgaaataaagaactgtttggcgaatctctactcatgtggaagcccacaccaatt 30181815  T
Q  122 aatnnnnnnnnnnnnnnnnnnnnnntaggtaagttgttcaata-acccttcaatttctcttccaatcagtttatgaccgc---cgatcgtttttgtatgt 217  Q
    |||                      |||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |   |||| | ||||||||||    
T  30181814 aatagaaaagaaaagaagaaaattataggtaagttgttcaatagacctttcaatttctctttcaatcagtttatgaccccgatcgattgattttgtatgt 30181715  T
Q  218 gaattccgatcaagatgcatctcttgattagcttttgtagtcaagtgaacaattttgag 276  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  30181714 gaatttcgatcaagatgcatcttttgattagcttttgtagttaagtgaacaattttgag 30181656  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 354 - 436
Target Start/End: Complemental strand, 17697339 - 17697257
Alignment:
Q  354 cttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17697339 cttggattaaatgagattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 17697257  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 17947089 - 17947004
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  17947089 ttgcttagattaaatgggattctatttgtttacctatgaatcgaggtggtttgggggggtggaggttaggtgaatttaatttatct 17947004  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 20252817 - 20252736
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaattt 432  Q
    ||||||||||||||||||||| | | || |||||| ||||| | |||||||||||||| ||||||||||| |||||||||||    
T  20252817 ttgcttggattaaatgggattttgtgtgcttacctttgaatagtggtggtttgggggttcggaggttaggggaatttaattt 20252736  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 9195791 - 9195709
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaattta 433  Q
    |||||||||| || |||||| | ||||||||| ||||| |||| |||||||||| |||  ||||| |||| ||||||||||||    
T  9195791 ttgcttggataaattgggatacaatttgtttatctgtggatcgtggtggtttggaggtttggaggctaggggaatttaattta 9195709  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 21824009 - 21824083
Alignment:
Q  356 tggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaat 430  Q
    |||||||||||||||||| || |||||||| ||| ||| ||| |||| ||||| |||| |||||| || ||||||    
T  21824009 tggattaaatgggattctgttggtttacctttgagtcgtggtagtttaggggttcggaagttaggggattttaat 21824083  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 351 - 436
Target Start/End: Original strand, 27293010 - 27293095
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27293010 ttgcttgaattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 27293095  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 351 - 436
Target Start/End: Original strand, 6457865 - 6457950
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||||||| |||||||||||||||||||||| |||| |||| ||||| |||||||| ||||||||||| |||||||||||||||    
T  6457865 ttgcttggataaaatgggattctatttgtttacttgtggatcgtggtggcttgggggttcggaggttaggggaatttaatttatct 6457950  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 438
Target Start/End: Original strand, 641695 - 641782
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatctct 438  Q
    ||||||||||||||||||||| | | |||||||||||||||   |||||||||||||| ||||||||| |||||||||||||||||||    
T  641695 ttgcttggattaaatgggattatgtgtgtttacctgtgaataatggtggtttgggggttcggaggttaagtgaatttaatttatctct 641782  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 8751244 - 8751325
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaattt 432  Q
    |||||||||| |||||||||||||| ||||||||| |||||| |||||||||||||||  |||||||||  |||||||||||    
T  8751244 ttgcttggataaaatgggattctatatgtttacctatgaatcaaggtggtttgggggttaggaggttagaagaatttaattt 8751325  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 2855422 - 2855337
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2855422 ttgcttggattaaatgggattctatttgtttacctgtgaatcgcggtggtttgggggtgcggaggttaggtgaatttaatttatct 2855337  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 351 - 436
Target Start/End: Original strand, 5194326 - 5194411
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||||||| |||||||||||| | |||||||||||||||   |||||||||||| | ||||||||||| |||||||| ||||||    
T  5194326 ttgcttggatcaaatgggattctgtgtgtttacctgtgaataatggtggtttggggtttcggaggttaggagaatttaacttatct 5194411  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 18488495 - 18488563
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttag 419  Q
    |||| |||||||||||||||||| ||||||||||| ||| ||| |||||||| ||||| |||| |||||    
T  18488495 ttgcctggattaaatgggattctgtttgtttacctttgagtcgtggtggtttaggggttcggaagttag 18488563  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 429
Target Start/End: Original strand, 20209053 - 20209127
Alignment:
Q  355 ttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaa 429  Q
    |||||| |||||||||| ||||||||||| ||||||| | |||||| ||||||| |||||| | || ||||||||    
T  20209053 ttggataaaatgggattttatttgtttacttgtgaattgtggtggtctgggggttcggaggctgggggaatttaa 20209127  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 429
Target Start/End: Original strand, 22103076 - 22103150
Alignment:
Q  355 ttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaa 429  Q
    |||||| |||||||||| ||||||||||| ||||||| | |||||| ||||||| |||||| | || ||||||||    
T  22103076 ttggataaaatgggattttatttgtttacttgtgaattgtggtggtctgggggttcggaggctgggggaatttaa 22103150  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 16478901 - 16478827
Alignment:
Q  356 tggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaat 430  Q
    |||||||||||||||||| || |||||||| ||| ||| ||| |||| ||||| |||| |||||| || ||||||    
T  16478901 tggattaaatgggattctgttggtttacctttgagtcgtggtagtttaggggttcggaagttaggggattttaat 16478827  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 13139100 - 13139015
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13139100 ttgcttggataaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 13139015  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 45702492 - 45702407
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||||||| ||||||||| ||||||||||||||||| |||| ||||| |||||||| ||||||||||| |||||||||||||||    
T  45702492 ttgcttggataaaatgggatactatttgtttacctgtggatcgtggtggcttgggggttcggaggttaggggaatttaatttatct 45702407  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 353 - 436
Target Start/End: Complemental strand, 22864055 - 22863972
Alignment:
Q  353 gcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||||| ||||  ||||||||||||||||||||| |||| ||||||||||||||  |||||||||| |||||||||||||||    
T  22864055 gcttggataaaatcagattctatttgtttacctgtggatcgtggtggtttgggggtttggaggttaggagaatttaatttatct 22863972  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 45469440 - 45469357
Alignment:
Q  351 ttgcttggattaaatgggattctatttg-tttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaattta 433  Q
    |||||||||| ||||||||| ||||||| |||||||||| |||| || || |||||||| ||||||||||| ||||||||||||    
T  45469440 ttgcttggataaaatgggatactatttggtttacctgtggatcgtggaggcttgggggttcggaggttaggggaatttaattta 45469357  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 438
Target Start/End: Complemental strand, 16936770 - 16936683
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatctct 438  Q
    |||||||||| || ||||| ||| ||||||||||| ||| || ||||||||| ||||| |||| |||||| || |||||||| |||||    
T  16936770 ttgcttggataaagtgggactctgtttgtttacctatgagtcaaggtggtttaggggtacggaagttaggggattttaatttgtctct 16936683  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 438
Target Start/End: Complemental strand, 17007430 - 17007343
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatctct 438  Q
    |||||||||| || ||||| ||| ||||||||||| ||| || ||||||||| ||||| |||| |||||| || |||||||| |||||    
T  17007430 ttgcttggataaagtgggactctgtttgtttacctatgagtcaaggtggtttaggggtacggaagttaggggattttaatttgtctct 17007343  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 438
Target Start/End: Complemental strand, 17064979 - 17064892
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatctct 438  Q
    |||||||||| || ||||| ||| ||||||||||| ||| || ||||||||| ||||| |||| |||||| || |||||||| |||||    
T  17064979 ttgcttggataaagtgggactctgtttgtttacctatgagtcaaggtggtttaggggtacggaagttaggggattttaatttgtctct 17064892  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 15139468 - 15139521
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgg 404  Q
    ||||||||||||||||||||| | ||||||||| ||||||| ||| ||||||||    
T  15139468 ttgcttggattaaatgggattatgtttgtttacttgtgaatagagttggtttgg 15139521  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 436
Target Start/End: Original strand, 26403768 - 26403853
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||||||| || ||||||| | ||||||||  |||| |||  || || ||||||||  |||||||||| |||||||||||||||    
T  26403768 ttgcttggataaagtgggattttgtttgtttatttgtggatcatggaggcttgggggttaggaggttaggggaatttaatttatct 26403853  T

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Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 327 - 436
Target Start/End: Original strand, 21312540 - 21312649
Alignment:
Q  327 ggggttgtgaggtttctnnnnnnnttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatt 426  Q
    |||||||||||||||||       ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21312540 ggggttgtgaggtttctaaaaaaattgcttggactaaatgggattctatttgtttacttgtgaatcgaggtggtttgggggtgcggaggttaggtgaatt 21312639  T
Q  427 taatttatct 436  Q
    ||||||||||    
T  21312640 taatttatct 21312649  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 8305921 - 8305836
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8305921 ttgcttggattaaatgggatattatttgtttacctgtgaatcgaggtggtttgggggtgcggatgttaggtgaatttaatttatct 8305836  T

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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 12214288 - 12214370
Alignment:
Q  354 cttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12214288 cttggattaaatctgattctatttgtttacctgtgaatcgaggtggtttgggggtgcagaggttaggtgaatttaatttatct 12214370  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 30044020 - 30044094
Alignment:
Q  356 tggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaat 430  Q
    |||||||| ||||||||| ||||||||||| ||| ||| |||||||| ||||| | || |||||| || ||||||    
T  30044020 tggattaattgggattctgtttgtttacctttgagtcgtggtggtttaggggttcagaagttaggggattttaat 30044094  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 17188597 - 17188512
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||||||| || ||||||||||| |||||||||||| |||| |||||||||||||| |||||| |||| |||||||||||||||    
T  17188597 ttgcttggataaattgggattctatctgtttacctgtggatcgtggtggtttgggggttcggaggctaggggaatttaatttatct 17188512  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 28066987 - 28067068
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaattt 432  Q
    ||||||||||||||||||| ||| | ||||||||| | ||||| ||||| |||||||| ||||||||||| |||||||||||    
T  28066987 ttgcttggattaaatgggactctgtgtgtttacctttaaatcgtggtggattgggggttcggaggttaggggaatttaattt 28067068  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 436
Target Start/End: Original strand, 39867106 - 39867191
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatct 436  Q
    |||||||||| || ||  ||| |||||||||||||||| |||| ||||| ||| |||| ||||||||||| |||||||||||||||    
T  39867106 ttgcttggataaattgaaattttatttgtttacctgtggatcggggtggattgagggttcggaggttaggggaatttaatttatct 39867191  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 46192072 - 46192015
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggt 408  Q
    |||||||| || |||||||||||||||||||||||||| |||  ||||| ||||||||    
T  46192072 ttgcttgggttcaatgggattctatttgtttacctgtggatcatggtggattgggggt 46192015  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 430
Target Start/End: Complemental strand, 137141 - 137074
Alignment:
Q  363 aatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaat 430  Q
    ||||| |||||||||||||||||||  |||  ||||||||||||||  |||||||| | |||||||||    
T  137141 aatggaattctatttgtttacctgttgatcatggtggtttgggggttaggaggttaagggaatttaat 137074  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 21140749 - 21140790
Alignment:
Q  394 aggtggtttgggggtgcggaggttaggtgaatttaatttatc 435  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||    
T  21140749 aggtggtttaggggttcggaggttaggggaatttaatttatc 21140790  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 438
Target Start/End: Original strand, 26892140 - 26892213
Alignment:
Q  365 tgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaatttatctct 438  Q
    ||||| ||| ||||||||||| ||| || ||||||||| ||||| |||| |||||| || |||||||| |||||    
T  26892140 tgggactctgtttgtttacctatgagtccaggtggtttaggggtacggaagttaggggattttaatttgtctct 26892213  T

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Target: scaffold0155 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 433
Target Start/End: Complemental strand, 32906 - 32828
Alignment:
Q  355 ttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaattta 433  Q
    |||||| |||||||||||||| |||||||||||| |||| ||||| |||||||| |||||| |||| ||||||||||||    
T  32906 ttggataaaatgggattctatctgtttacctgtggatcgtggtggcttgggggttcggaggctaggggaatttaattta 32828  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 34504003 - 34504069
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggtt 417  Q
    ||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||| ||||||||    
T  34504003 ttgcttggattaaatgggattctatctgtttacctgtaaattgtggtggtttgggggttcggaggtt 34504069  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 16631181 - 16631256
Alignment:
Q  355 ttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggtgcggaggttaggtgaatttaat 430  Q
    |||||| |||||||||||||||||||||||||||||| | |||||| ||||||| |||||||| ||  ||||||||    
T  16631181 ttggataaaatgggattctatttgtttacctgtgaattgtggtggtctgggggttcggaggttggggaaatttaat 16631256  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 14206310 - 14206340
Alignment:
Q  354 cttggattaaatgggattctatttgtttacc 384  Q
    |||||||||||||||||||||||||||||||    
T  14206310 cttggattaaatgggattctatttgtttacc 14206340  T

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Target: scaffold0074 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 37286 - 37229
Alignment:
Q  351 ttgcttggattaaatgggattctatttgtttacctgtgaatcgaggtggtttgggggt 408  Q
    |||||||||| ||||| |||||||||||||||||| || |||| |||||||| |||||    
T  37286 ttgcttggatcaaatgagattctatttgtttacctatgtatcgtggtggtttcggggt 37229  T

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